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Sample 3300017032
3300017032: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in K medium, 20 C, 35 psu salinity and 501 ?mol photons light - Bolidomonas pacifica RCC 208 (MMETSP1319)
Overview
| Basic Information |
| IMG/M Taxon OID | 3300017032 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0128947 | Gp0211996 | Ga0186284 |
| Sample Name | Metatranscriptome of marine eukaryotic communities from Pacific Ocean in K medium, 20 C, 35 psu salinity and 501 ?mol photons light - Bolidomonas pacifica RCC 208 (MMETSP1319) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | National Center for Genome Resources |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 20841330 |
| Sequencing Scaffolds | 1 |
| Novel Protein Genes | 1 |
| Associated Families | 1 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| All Organisms → cellular organisms → Eukaryota | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Location Information |
| Location | Pacific Ocean |
| Coordinates | Lat. (o) | -16.0 | Long. (o) | -150.0 | Alt. (m) | N/A | Depth (m) | 5 |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F026197 | Metagenome / Metatranscriptome | 198 | Y |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0186284_105169 | Ga0186284_1051691 | F026197 | PHLSPPPLSLMVRFALATALLAISAPGLTSALLKMPPHVSEASICEGGACEGDAMPYERVSASQPGYQWNDAGGYCGFWATQRAVLSKGAWISQQQVRDHTSPCGGNDNEILSCNIDEAWTNLKLDYDGFDFEGEATPQTDAYKSWLKGHLVEGNAVAWMILWSGQTYPIYDLTPPAGMYGHVEPVIGIQSNHPLNDTKVYDDDVILHYTDGGVNTVHRTMSTLEGEWAGPGEKADCGDYSYCIGNPWGYGWAVKGFSDKVDAAPASLRVDPWLSEPDTRSGEDPNAMQGTLTATELEVGETYDIYRWDSVKDALTYTGDFVKATFKATEDTYKYVDDESFQSDSATYYRVVKK |
