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Sample 3300017019
3300017019: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium, 6 C, 21 psu salinity and 416 ?mol photons light - Detonula confervacea CCMP 353 (MMETSP1058)
Overview
| Basic Information |
| IMG/M Taxon OID | 3300017019 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0128947 | Gp0212238 | Ga0186526 |
| Sample Name | Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium, 6 C, 21 psu salinity and 416 ?mol photons light - Detonula confervacea CCMP 353 (MMETSP1058) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | National Center for Genome Resources |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 35531693 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 3 |
| Associated Families | 2 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi | 2 |
| All Organisms → cellular organisms → Eukaryota → Sar | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Location Information |
| Location | Atlantic Ocean |
| Coordinates | Lat. (o) | 41.6 | Long. (o) | -71.4 | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F067805 | Metagenome / Metatranscriptome | 125 | Y |
| F099352 | Metatranscriptome | 103 | Y |
Associated Scaffolds
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|
| Ga0186526_116156 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi | 734 | Open in IMG/M |
| Ga0186526_117491 | All Organisms → cellular organisms → Eukaryota → Sar | 601 | Open in IMG/M |
| Ga0186526_118156 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi | 542 | Open in IMG/M |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0186526_116156 | Ga0186526_1161561 | F099352 | MVFNGSEAFRGAGAPSLKGEVSVSQNTNRVVLDSQELNAASGAFNLCCAEAYSRFTELKRVKIHPGNMTTERDAVESCSANVFNGIQSSCLEQFEAVKSCISDNSDEWAKCAAVRRELEVCSVTNKFGELKKA |
| Ga0186526_117491 | Ga0186526_1174911 | F067805 | MGQPKEELTLSKKEQKKVDKLSAQIPYHEGRGNKEEVTKIKERVDAIWIKAKEAHEAQFA |
| Ga0186526_118156 | Ga0186526_1181561 | F067805 | MGKKQQPKEEDLTLSKKEQKKVDKLSAQIPYHEGRGNKEEVTKIKEQVDAIWTKAKAAHAAQFA |
