NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017013

3300017013: Metatranscriptome of marine eukaryotic communities from North Sea in modified f/2 medium with seawater, 10nmol/L H2SeO3, no copper and silicate, 25 C, 15 psu salinity and 602 ?mol photons light - Skeletonema marinoi SM1012Den-03 (MMETSP0320)



Overview

Basic Information
IMG/M Taxon OID3300017013 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0212057 | Ga0186345
Sample NameMetatranscriptome of marine eukaryotic communities from North Sea in modified f/2 medium with seawater, 10nmol/L H2SeO3, no copper and silicate, 25 C, 15 psu salinity and 602 ?mol photons light - Skeletonema marinoi SM1012Den-03 (MMETSP0320)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size35259477
Sequencing Scaffolds14
Novel Protein Genes14
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema11
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP11022
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationNorth Sea
CoordinatesLat. (o)55.5837Long. (o)12.412Alt. (m)N/ADepth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034938Metagenome / Metatranscriptome173Y
F068121Metagenome / Metatranscriptome125Y
F099352Metatranscriptome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186345_110596All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema1225Open in IMG/M
Ga0186345_111457All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema1136Open in IMG/M
Ga0186345_111791All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema1100Open in IMG/M
Ga0186345_112066All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema1072Open in IMG/M
Ga0186345_112293All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema1048Open in IMG/M
Ga0186345_112642All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema1017Open in IMG/M
Ga0186345_112730All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema1009Open in IMG/M
Ga0186345_113062All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema978Open in IMG/M
Ga0186345_113558All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema929Open in IMG/M
Ga0186345_113650All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema921Open in IMG/M
Ga0186345_113942All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema890Open in IMG/M
Ga0186345_114575All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102822Open in IMG/M
Ga0186345_114663All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102814Open in IMG/M
Ga0186345_117053All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi602Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186345_110596Ga0186345_1105961F034938MNAPFPNAQRMHYEGAASSSTGGGGHRTMINEAIILPKISADDQVAQRDDEESNANATNMVLWRGNLVAEKEAMALRHVFDDMQDHFGHQRADPRVRFNANLVRPSRDGMWFGDLDFTYNINGEHCNLGYIGMDVCVDLCPKLVHKHGQLRLKNYGKSWVYVYLPQLTLDKFKSYVKTGTGWDVSNEGTVYDPNRNLVAIEAMLHHQTGQPKPSFWAVKDKDAPGDNMSFSRIGTVQEVNEHPHQQRVHRGVGIFSVSMEVEGSPNFKPTPRAGDEANLCFTLVSVRTWGVTDCVAPIVHAPNKWY
Ga0186345_111457Ga0186345_1114571F034938RLAPIYSWAYCVEISSFFVYIYIRPMMAPGDEHDEEQPPTRMVVWRGNSVPEKEAKALRHVFDNLQDHFGHQRPDPRIRFSANLTYPGHGPMWVGDLDFMYDINGDHCSLAYFGMDVCVDLTSKLIHKHGQPMMKDYGKTWLYVYLPQLTLDKVISYVKAGTGYDVSTEGTVYDPNRNLVAIKAKLHHESEQPKPSFWVVKDKDASASASAYGKDISFTRVGSIQEVNAQPHQQHVHRGVGIFSVSIEVEGTPNFKPTPGAGDEAKLTFTLVSVRTWGITDYVAPIVYASSK
Ga0186345_111791Ga0186345_1117911F034938RTQHKKRPLSIDPPPPINNIMMMHYTTNNTTEGSSERLSLYPAYSKTAPQPPAHVIRNIADHNNQMAAASRDDEETVADAANTLAEWRGNTVPEKEAKALRHVFDDLQDHFGYQRVDPRVRFNNTNLARLGNGGTWFGDLDFTYDIKGDHCNLAYIGMDVCVDLTPKLVHKHGQPMLRDYGKSWVYVYLRQLTLDKVKSYVKTGTGWDVSDDGTVFDPNRNLVAIEAKMHHQTGQPKPSVWVAKDKNASEQDMSFSRIGTVQDVSSHPSQQRIHRGVGIFSVSMEVEGGPNVRPTPGMGCEANLCFTLVSLRTWGITDCVAPIVHAPSKWY
Ga0186345_112066Ga0186345_1120661F034938CIVLMFCITAQLSKRMSRNCFDVEVEVEVEVEENSFENSGRMMEANINVPNIANHIDIDQAAQAQREDASSTNSNMVKWRGNAVSKKEAKGLRHVFDNLQDHFGHERPDPRIRFSASLAHPGQGQIWNGDLDFTYDINGDQCDLAYVSMDVCVDLTPKLVHKHGQPMLRDYGKSWVYVYLRQLTLDKVKSYVKTGTGWDVSDDGTVFDPNRNLVAIEAKMHHQTGQPKPSVWVAKDKNASEQDMSFSRIGTVQDVSSHPSQQRIHRGVGIFSVSMEVEGGPNVRPTPGMGCEANLCFTLVSLRTWGITDCVAPIVHAPSKWY
Ga0186345_112293Ga0186345_1122931F034938MHKMAANEANVNQNIAAQNEQAGQIDVDEDPNMVQWRGNLVTEKEAKALRHVFDNLQDHFGHQRPDPRVRFNHVSLAHPGHGQKWHGDVDFTYEIDGDHCKLNYIGMDVCIDLAPKLVHKHGQPLLNDYGSTWLYVYLPQLSIDKVKSYVKAGTGWDVSGEGFIDDNNRSMVAIEVKLCNESGQPEPSFWVVKDKDASGGRGSMSFSRIGSVQEVAAQPHQQRIHRGIGIFSISMEVDGTSNLEPTPGTWDEANLSFTLVSARTWGVTDCVAPIVYAPSKRHLD
Ga0186345_112642Ga0186345_1126422F034938MANEAPANVIPIPNDEESVASNADKDMVKWRGNLVPREEAKALRHVFDDLKDHFGHQQPDPHVRANVTSFKHPGHGLMWHGNLDFTYQIEGEHCNLGYIGMDVCIDLIPKKCQKQGEPTLKDYGKTWVYVYTPQETLDKFIKYVKIGTGWGVSTDGTAHDPNRNLVAIEARLHHQTDQPKPSFWVAKNRDASIGDMSFSRIGSVQEVNETSAQQRVHRGIGIFSVSLEVEGTPNFEPTPGNRDDANLCFTLVSVRTWGITDCVAPIVHAPSKWF
Ga0186345_112730Ga0186345_1127301F034938ISSFFVYIYIRPMMAPGDEHDEEQPPTRMVVWRGNSVPEKEAKALRHVFDNLQDHFGHQRPDPRVRFSVSLAPGQGQIWYGDMNFTYNINGDHCDLDYIAMDVCVDLTPKVVHKHGQPMLKDYGNSWVYVYLPGLTLDNVKSYVKTGTGWDVSTEGIVYDPNRNLVAIEAKMSNQTGQPKPSFWVAKDKDTSASRGDMSFSRIGSVQEVNAQPQHQFVHRGVGIFSVSMEVEGTPSFKPTPGAGDEAKAKLSFTLVSVRTWGITDCVAPIVHTPSMGLN
Ga0186345_113062Ga0186345_1130621F034938RLAPIYSWAYCVEISSFFVYIYIRPMMAPGDEHDEEQPPTRMVVWRGNSVPEKEAKALRHVFDNLQDHFGHQRPDPRIRFSANLTYPGHGPMWVGDLDFMYDINGDHCSLAYFGMDVCVDLTSKLIHKHGQPMMKDYGKTWLYVYLPQLTLDKVISYVKAGTGYDVSTEGTVYDPNRNLVAIKAKLHHESEQPKPSFWVVKDKDASGGDICFSRMGSVQEVNALPHQQHVHRGVGIFSVTMEVEGTPNFQPTPREGEEANLSFTLVSVRTWGITDCVAPIVHSPPDKWS
Ga0186345_113558Ga0186345_1135581F034938ISSFFVYIYIRPMMAPGDEHDEEQPPTRMVVWRGNSVPEKEAKALRHVFDNLQDHFGHQRPDPRVRFSVSLAPGQGQIWYGDMNFTYNINGDHCDLDYIAMDVCVDLTPKVVHKHGQPMLKDYGNSWVYVYLPGLTLDKFNSYVKIGTGWDVSDERTVYDPNRNLVAIEAKMHHQTGQPKPSVWVAKDKNASEQDMSFSRIGTVQDVSSHPSQQRIHRGVGIFSVSMEVEGGPNVRPTPGMGCEANLCFTLVSLRTWGITDCVAPIVHAPSKWY
Ga0186345_113650Ga0186345_1136501F034938NQNIAAQNEQAGRIDDEDSNMVQWRGNLVPEKEAKALRHVFDNLQDHFGHQRSDPRVMFNHVSLAHPGHGQKWHGGMDFTYDIGGDHCNLKYIGMDVCIDLTPKLVHKHGQPMLKDYGRSWVYVYLPQMTIDKVKSYVKAGTGWEVSDEGFIGDPNRNLVAVEANLNHQGGEPEPSFWDIQDQDDSGGRGSISSSRIGSVQEVTAYSHHQRIHRGVGIFSVSMEVEGTPNCKPTPGVGDEAKLCFTLVSVRTWGITERVAPIVYAPSKWH
Ga0186345_113942Ga0186345_1139421F034938RDDEETVAAAATTMTQWRGNTVPEKEAKALRHVFDDLQDHFGYQRVDPRVRFNNTNLARLGNGGTWFGDLDFTYDIKGDHCNLAYIGMDVCVDLTPKLVHKHGQPMLRDYGKSWVYVYLRQLTLDKVKSYVKTGTGWDVSDDGTVFDPNRNLVAIEAKMHHQTGQPKPSVWVAKDKNASEQDMSFSRIGTVQDVSSHPSQQRIHRGVGIFSVSMEVEGGPNVRPTPGMGCEANLCFTLVSLRTWGITDCVAPIVHAPSKWY
Ga0186345_114575Ga0186345_1145751F068121LPKGKIKPSPEDKTIWTDDDGRPWKLNAEPNAAYHQPYTVPIAFIRAHLSKFIPGLKVPNLKFISPNADGKYSEIVANRYTGELIIEQNIMGTFNLATDAPDAMIDGKLPTIGGHNLLDVIPHNKYGGGYKHIATGIETGSIEKGPIVLAHLEEIASF
Ga0186345_114663Ga0186345_1146631F068121MSDEQIKQETGLSREDHENRNQFNELPKGKIKPSPEDKTIWTDDDGRPWKLNAEPNAAYHQPYTVPIAFIRAHLSKFIPGLKVPNLKFISPNADGKYSEIVANRYTGELIIEQNIMGTFNLATDAPDAMIDGKLPTIGGHNLLDVIPHNKYGGGYKHIATGIETGSIEKGPIVLAHLEEIASF
Ga0186345_117053Ga0186345_1170531F099352MVFNGAEAFKGASAPSLEREVSVTSNNNRVLLDSQELNAASGAFNLCCGEAYARFSELKRLKIHPGNMTKERDAVESCSANVYNGIKASCVEQFDAVKSCLSDNPDVWAKCASMRRELEVCSVKNNLGELKKLSS
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