| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300016996 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128947 | Gp0211995 | Ga0186283 |
| Sample Name | Metatranscriptome of marine eukaryotic communities from Pacific Ocean in K medium, 20 C, 35 psu salinity and 94 ?mol photons light - Pelagomonas calceolata RCC 969 (MMETSP1328) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | National Center for Genome Resources |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 20967099 |
| Sequencing Scaffolds | 15 |
| Novel Protein Genes | 17 |
| Associated Families | 16 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata | 15 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -29.23333333 | Long. (o) | -101.4833333 | Alt. (m) | N/A | Depth (m) | 160 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F017306 | Metagenome / Metatranscriptome | 241 | Y |
| F017397 | Metagenome / Metatranscriptome | 241 | N |
| F023863 | Metagenome / Metatranscriptome | 208 | N |
| F025972 | Metagenome / Metatranscriptome | 199 | N |
| F030404 | Metagenome / Metatranscriptome | 185 | Y |
| F033072 | Metagenome / Metatranscriptome | 178 | N |
| F037241 | Metagenome / Metatranscriptome | 168 | N |
| F039006 | Metagenome / Metatranscriptome | 164 | N |
| F050839 | Metagenome / Metatranscriptome | 144 | Y |
| F062799 | Metagenome / Metatranscriptome | 130 | N |
| F070163 | Metagenome / Metatranscriptome | 123 | Y |
| F075316 | Metagenome / Metatranscriptome | 119 | N |
| F077349 | Metagenome / Metatranscriptome | 117 | N |
| F093977 | Metagenome / Metatranscriptome | 106 | N |
| F096036 | Metagenome / Metatranscriptome | 105 | N |
| F105005 | Metagenome / Metatranscriptome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0186283_100100 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata | 6356 | Open in IMG/M |
| Ga0186283_100482 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata | 3441 | Open in IMG/M |
| Ga0186283_101892 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata | 1943 | Open in IMG/M |
| Ga0186283_101992 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata | 1899 | Open in IMG/M |
| Ga0186283_102108 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata | 1856 | Open in IMG/M |
| Ga0186283_105266 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata | 1201 | Open in IMG/M |
| Ga0186283_105966 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata | 1118 | Open in IMG/M |
| Ga0186283_106014 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata | 1112 | Open in IMG/M |
| Ga0186283_107189 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata | 990 | Open in IMG/M |
| Ga0186283_107937 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata | 924 | Open in IMG/M |
| Ga0186283_108280 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata | 895 | Open in IMG/M |
| Ga0186283_111917 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata | 627 | Open in IMG/M |
| Ga0186283_112065 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata | 616 | Open in IMG/M |
| Ga0186283_112324 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata | 597 | Open in IMG/M |
| Ga0186283_113344 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata | 531 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0186283_100100 | Ga0186283_1001001 | F017397 | VVPPGPDCLSQCINQIVAARPPLNHDIHAIDAIGSMAWRCGLPLLDSVSTAAFSPRKDLVKNYRNAPDSLISTQVGLISDPIFVCYGVYMVLMSVASFNNPRIGANLIMFENITYFFSSQTAYFWLAIPCVMTMAPDPSALTYDAVTLTIGGLWVEVHMNYIYGHIAAWAPLENNEAPDKLGLLRAQQMFFVTAPLHTLAIFQGTQDSWKILFAAKDASRWASFDSINAITTAKLWVLTMMVMLSSSVVVGLVRIGTAKKPFDEIERWLGVVMSFVFLSLTAVPSAAMFFHKSVTKAKAKPSLMDRCTAGVFGKALVITPSLFYMFLYSAAIVVLLALRGRAQNAGF |
| Ga0186283_100482 | Ga0186283_1004821 | F077349 | MAMAFVRMARQRHIVGPALLAASTLAFVPRATVCRGTDRFFASQQGGSEDDDVARLRRENAELKSKLARQKEPSESGGFLEGLAKTFGFGKTDEEKALEKQKKQMDSAIDEVFKGGGLVGGLMGSLAKGVVGAAGKMFAETQGDMDSVLRAIENRLRDRLGDDVQCSMPMQQMYSSSNINGNVVKQVQLVTQAQGSRGAGVVRATASIDGAGNVAIQSLDVDGSSVAGSVRGGGGKNDVIIDV |
| Ga0186283_101892 | Ga0186283_1018921 | F093977 | MSCRRREYVRAQTASIRQVTVIGLEPEVQRLIQKQKRDTIAQRTAQDLAWSAIRAKMSGKLFDQQVALRETMSRVHAQRDFNENIRIGQSITALQCEFQHRCTITSRAQSGRIAKLQAELQKKLHLDRAKFQRMHQNLCMTKRDRLRTRRDQLACVRDTVYQLQCFGSRIVAEARNSDHAVWIQATISHVNTISKESFSVRTEEVLRRRDTTIGNIIHHDQALTHTWELGIMHAADAYETSCKDYHCAIIARLQIQRTNWIKHTKILIREIQSLNQEVCALKAIGDKTKNRWHDMEMALAKPSYEAGSHAYKLLRTQTSRQQTRAQELYLLDDKCAAAELPIKAITTNIRRLVATYDFLQGQHHEFHQRALISKNKAVQCHLRDNANRLVRTVDKIGLETVRHNHLTKMLASYTRS |
| Ga0186283_101992 | Ga0186283_1019921 | F070163 | MRSADTSESTLWRGHLRECLADATQSYGSHTIAADPDELSRRWRKLPWAKQRELFKSWAQPRASDCYPGDLHLSWWWDLRSVGFGHYGSWSDDDMSTVVTKTTYYEVWLSASGTRVYRKTSSWCDLPANLVVPVVLAVGAFVVAGLAVGAAKLIMWLW |
| Ga0186283_102108 | Ga0186283_1021081 | F062799 | MGNIAARQASRSIYHDPSIRRALQLRGFATATRYGFIKGTGSGLRPAQKKAQAPNPQLRVALQQRYGELALQKKSQDSGKVRQLVASTGAKYRVPACDPWSRGQLFR |
| Ga0186283_102108 | Ga0186283_1021082 | F030404 | MILALCTSALAFAPPRRGPCLGPLAYGRRGDAAHDRWRSTADALATWRGDEATVAKFWRIDCDDDGFTWERRWPRRKPVVEHVAWDRITRVCWECGEWLCMDNFYLIADDEDSEWVVPSGALDHGRLVDALDRKGLFSNKTYINCQCVSDGGFTICEANPNAKAPAPSTNLSYVDRLHATEQAPCRIIRRSKLKQN |
| Ga0186283_105266 | Ga0186283_1052661 | F050839 | VKRLFLQVFADAAAHGEPDDRAGARADVRTHRCPHALAERGPDFEAQLHPDFCAFGAAERAALVEAYVRTNVQADDTPVSQADRVERAPLNIVCLVSPTLPTPPALP |
| Ga0186283_105966 | Ga0186283_1059662 | F039006 | MSLHDVMLSNDDLLAAVDLTVDFHGNEASVEEHGMVLLDVNRNHLCVQHEADLDQTEWWPTAHCMFGLQACLDNDGSTTCDQAESGSEDDLTLSGGETDLKNCDCSLDGVTSYCLSKYTDVEWSALDKTCDVSRLAKKSSGRAAQADDGATLWVTIDGIKYTYAEGAAYGGTNTEEGFGAWAARVMGVVCQSVQNAGQVVPESCAGYFPPH |
| Ga0186283_106014 | Ga0186283_1060143 | F050839 | MQRRVTNAPLRADVFADAAAHGEPDDRAGARADVRTHRCPHALAERGPDFEAQLHPDFCAFGAAERAALVEAYVRTNVQADDTPVSQADRVERAPLNIVCLVSPTLPTPPALP |
| Ga0186283_107189 | Ga0186283_1071891 | F025972 | KTSEFWLRAKGCPTAPINPTTPSAARHEATHPTKPPRRAEKAAMWKLLLLATATAVELKQKMIIRNTGSEDLAVYFMGALHEGDLSLWDGSETLNDIVSPGQTTARYVRYNDSFAVRSGDLKWRVRLSLYKNDDAEQPYKVTFHNVMTDEKDQPVELKHHAAGYLWIEPNHHVTHSAAQGHEFALRDRESKERLAVSVHALGRDEL |
| Ga0186283_107937 | Ga0186283_1079371 | F017306 | MSAMQLELSQRTEDHGIADAYLVVVSTASDELVHEFCAYSSAYGGPVRPDPVTGLRAEQIDKGRATVRWEWSENSFDLASPGAYFERDVILDPLAWAGPVRKTPKTKPVAPAPKVDVSHELRAVDVAVKSEWRQNGCDDEWEIHVSHAATGTKLVWKGTSTAENQDIKKLRHTEVDGVVRIDFVYYCGENGSNSASDRSLFVKLGETGIEWVPKHVCSGRLHDGRCSGTL |
| Ga0186283_108057 | Ga0186283_1080571 | F096036 | MMARHTALVAALCASTACALLAPPQRVRFMRPLKAAGLDPSSPQMQAEFEKLKDASRGFVEKELELMGIPHSADMDDMTIKLRLMEARIVMAAPAAAGPAANASPYEKLVFEKPAIKAYVDRLYNKGDINGANIFMEYINDPQQAQNRYGKEADYQAVFAKADELMAAPAFTSAKLAYSGFPMMGEDGLRGQMESIGAVKAFSVTEEDPVTGMTGTVEFEAEADAKTAVEKWDGADMGNDVMLSLKYQ |
| Ga0186283_108280 | Ga0186283_1082801 | F023863 | MARRCLAVLALTSLSAAQNPWVNRRKNKDKDAPVAADPAAGDTDFSKLNDMVKNLQQAGAAGGQGEDMFAGMGDMWESLMDSPEMEEMLANPELLKATIKNNPLINAIPGASEQVEALLQSDAFNDPAQLKQAMRQGVDAMKAVGSEFGSQLGAQMKLAQQNPEAFKAQMEAMMSQLAGGPEQGRALMEAAKGLWDGSADPAQLEALSKLPGMEALADPEAMKRQMAELQKMMGAGQMPAMGGEL |
| Ga0186283_111917 | Ga0186283_1119171 | F105005 | MYKAITLALALSAPALAIKKPAHGAAALRVRGGTFGFDAHQTGEQCGIEEPEKEVVKTIKTAVTYPIKKVFGIARGGALLDVSARETAEACEIEDPEPLVVRTIKAAFDYTAERVLESGVVPDELAKD |
| Ga0186283_112065 | Ga0186283_1120651 | F075316 | MGLEWIRERRRSDKAAVVKRKKVVNPDTGETPEGYNKMLRDCARIALAGASASLLCGWPQIALVASAVAAGLLQQGTTYSIKNWKWTAVSWCLLPACLTAWFLRSTAGMVDPDRGYSIYILLVMVGRFTEFAAGSTVAIFLAFALAAPPDRSGEAR |
| Ga0186283_112324 | Ga0186283_1123241 | F033072 | MKLVLALALGASAFGGFGKKSAAPAPSRGGGNQVAQGGQTVTNIQVPKIFTTAFGDPGRLAERAARAEAKKAEAEAQLIPTPARFAFAFGRPDILAERRAERLAKWEWSDEFLAKARPDQGNYGQGDVYDDGLTVLERAQIETGREAYLTGGAKLRYKRLTGQI |
| Ga0186283_113344 | Ga0186283_1133441 | F037241 | LPICHMAAQLYKMRRRLLPLLLACTTAAKSTYWREVEAKKKRPAAAAYCPKRCFKTEASGDEKREVADLTCCSSAQGSLFELAAFVAATTETAVRGFSLGFGYVLVKATLRAADSDEGPQSGHDFGPAYRFARMAGLGVACSFVGLSMFVPVGLRLGHRLA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |