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Sample 3300016994
3300016994: Metatranscriptome of marine eukaryotic communities from Arctic Ocean in K/2 medium with silica, 4 C, 35 psu salinity and 494 ?mol photons light - Minutocellus polymorphus RCC 2270 (MMETSP1322)
Overview
Basic Information
IMG/M Taxon OID 3300016994 Open in IMG/M GOLD Reference Gs0128947 | Gp0212300 | Ga0186588 Sample Name Metatranscriptome of marine eukaryotic communities from Arctic Ocean in K/2 medium with silica, 4 C, 35 psu salinity and 494 ?mol photons light - Minutocellus polymorphus RCC 2270 (MMETSP1322) Sequencing Status Permanent Draft Sequencing Center National Center for Genome Resources Published? N Use Policy Open
Dataset Contents
Total Genome Size 21526758 Sequencing Scaffolds 2 Novel Protein Genes 2 Associated Families 2
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Cymatosirophycidae → Cymatosirales → Cymatosiraceae → Minutocellus → Minutocellus polymorphus 1 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Location Information
Location Arctic Ocean Coordinates Lat. (o ) 71.18333333 Long. (o ) -159.4166667 Alt. (m) N/A Depth (m) 0 Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F051162 Metagenome / Metatranscriptome 144 Y F067805 Metagenome / Metatranscriptome 125 Y
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0186588_112224 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Cymatosirophycidae → Cymatosirales → Cymatosiraceae → Minutocellus → Minutocellus polymorphus 609 Open in IMG/M Ga0186588_112606 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta 578 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0186588_112224 Ga0186588_1122242 F067805 MGGKGKQKIEDVTLSKKEQKKVTKLEAQIPYHEGRGEKEEADKIQQKIDAIWAKAKEAAFAM Ga0186588_112606 Ga0186588_1126061 F051162 PLVKLFARTTLTKAIPLPAIQQMMCDVWGTKPETTKLILTRVDDWTEDSFNEDVYVDIRAYGKAERTRDFVLDGMKTIQKNLKDEHELVVNVRLETYDGERYFHVPPPN
