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Sample 3300016983
3300016983: Metatranscriptome of marine eukaryotic communities from Antarctic Ocean in modified f/2 medium with seawater, 3 C, 33.6 psu salinity and 118 ?mol photons light - Corethron pennatum L29A3 (MMETSP0169)
Overview
Basic Information
IMG/M Taxon OID 3300016983 Open in IMG/M GOLD Reference Gs0128947 | Gp0212319 | Ga0186607 Sample Name Metatranscriptome of marine eukaryotic communities from Antarctic Ocean in modified f/2 medium with seawater, 3 C, 33.6 psu salinity and 118 ?mol photons light - Corethron pennatum L29A3 (MMETSP0169) Sequencing Status Permanent Draft Sequencing Center National Center for Genome Resources Published? N Use Policy Open
Dataset Contents
Total Genome Size 28759913 Sequencing Scaffolds 2 Novel Protein Genes 2 Associated Families 1
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi 2
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Location Information
Location Southern Ocean Coordinates Lat. (o ) -47.33333 Long. (o ) -15.65 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F096567 Metagenome / Metatranscriptome 104 Y
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0186607_105772 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi 1510 Open in IMG/M Ga0186607_106046 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi 1473 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0186607_105772 Ga0186607_1057721 F096567 MKYSSLCVTITMSLSIADSATLVPKKQKKGKVGKRSKGSEKVPEIGSLMDKAFPMWEVDDTGSRKVEKPCSVDSCEWNPFYVTKRYDGLHPDYGGHPTDFDVKYHFFGASPFGGQPYSGTPHHCKMCDSDDVKAGDCPKLDTLNDTGPYGPGHVPPHISLASLTWGYQDMLLELKDMFNYDLYECRVTPDALLHMIRNYYPREDGVKVDYPPPITPEGGDFQYEFPAGNGLANQKPPYAPGPPHWCTQEMKDSGHWDGVCPYVFEGPDAGKYRHPHIAFAALEVYLANMAMPDKCAETWLENNPEFIDTTRVTTDTPFPVMDADAEPKTSVAHWVGQPVLPWVYDSGEPKTVHGNFATHVYFATC Ga0186607_106046 Ga0186607_1060461 F096567 LQGTRKEKKVFSFYNHKIKVLFSQEGKTHLNKFNTMKYSSLCVTIFMSLSIADSVTLQPKQKKKGKKAKASHKVPEIGSLMDKAFPMWEVDDTGSRKVEKPCSVDSCEWNPFYVTKRYDGLHPDYGGHPTDFDVKYHFFGASPFGGQPYSGTPHHCKMCDSDDVKAGDCPKLDTLNDTGPYGPGHVPPHISLASLTWGYQDMLLELKDMFNYDLYECRVTPDALLHMIRNYYPREDGVKVDYPPPITPEGGDFQYEFPAGNGLANQKPPYAPGPPHWCTQEMKDSGHWDGVCPYVFEGPDAGKYRHPHIAFAALEVYLANMAMPDKCAETWLENNPEFIDTTRVTTDTPFPVMDADAEPKTSVAHWVGQPVLPWVYDSGEPKTVHGNFATHVYFATC
