NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300016941

3300016941: Metatranscriptome of marine eukaryotic communities from Terra Nova Bay in natural sea water, 18 C, 35 psu salinity and 265 ?mol photons light - Euplotes focardii TN1 (MMETSP0206)



Overview

Basic Information
IMG/M Taxon OID3300016941 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0128947 | Gp0211934 | Ga0186222
Sample NameMetatranscriptome of marine eukaryotic communities from Terra Nova Bay in natural sea water, 18 C, 35 psu salinity and 265 ?mol photons light - Euplotes focardii TN1 (MMETSP0206)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size11851335
Sequencing Scaffolds1
Novel Protein Genes1
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomemarine water bodysea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationTerra Nova Bay
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007073Metagenome / Metatranscriptome358Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186222_103258Not Available954Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186222_103258Ga0186222_1032581F007073AVSSRAGILCDLFCLLAMYAKAILLVVALGAIAAVAQDLPANWAGTFTANNRYGGQMYSCPRGNTLYGVYSNAGFFIGAITGRTVEGNWYEGGRGDRNDWQGSFRITLSDDNQEFDGFYYRVTEDGQERRWHEKRLGAPWPSNPTAEECLIPGDENLLGAFFRQPHDSVAAGSYSLCKDEWSQIYGSFSDPDGYIEGWSVDSATGFHGYRYDNTGRSGAYILRALDQNTVKGFYWRGRLARQNIETVQSETLNRSSFTAKLMDCERVGPGFLERLRGPDGDDNSSASALAVSAIAFVVAAIALF

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