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Sample 3300016928
3300016928: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater and 14nM iron, 19 C, 35 psu salinity and 610 ?mol photons light - Thalassiosira weissflogii CCMP 1010 (MMETSP1415)
Overview
Basic Information
IMG/M Taxon OID 3300016928 Open in IMG/M GOLD Reference Gs0128947 | Gp0212285 | Ga0186573 Sample Name Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater and 14nM iron, 19 C, 35 psu salinity and 610 ?mol photons light - Thalassiosira weissflogii CCMP 1010 (MMETSP1415) Sequencing Status Permanent Draft Sequencing Center National Center for Genome Resources Published? N Use Policy Open
Dataset Contents
Total Genome Size 29324371 Sequencing Scaffolds 2 Novel Protein Genes 2 Associated Families 2
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi 1 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Location Information
Location Atlantic Ocean Coordinates Lat. (o ) 37.0 Long. (o ) -65.0 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F051162 Metagenome / Metatranscriptome 144 Y F099352 Metatranscriptome 103 Y
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0186573_112577 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi 863 Open in IMG/M Ga0186573_114067 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta 709 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0186573_112577 Ga0186573_1125771 F099352 MVDFTQQAFNGDSLSLEREVSVTSNNNRVILDSKELNASSGPFNLCCGEAYARFSELKRQKVHPAKMTKERDAVESCSADVYKGMQSNCVTQFEAVISCLSDNPKEWAKCAVLRRELDVCAVKNKLGEIAKLG Ga0186573_114067 Ga0186573_1140671 F051162 VNYDRLTMPLVKIFARNGMTKSIPLTTLQSKLCGIWGTKPETTKLMLSRVDDWTSDHKEDCYVDIRAYGKPERTRDFVLDGMAKVQQAFAEHDLAANVRLETYEGERYFHVPPKNS
