Sample 3300016904

Overview

Basic Information
IMG/M Taxon OID	3300016904 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128947 \| Gp0212067 \| Ga0186355
Sample Name	Metatranscriptome of marine eukaryotic communities from North Pacific Ocean in Standard Aquil medium with 100 uM EDTA, 12 C, 32 psu salinity and 428 ?mol photons light - Skeletonema marinoi UNC1201 (MMETSP1428)
Sequencing Status	Permanent Draft
Sequencing Center	National Center for Genome Resources
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	25887788
Sequencing Scaffolds	6
Novel Protein Genes	6
Associated Families	2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	5
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	North Pacific Ocean
Coordinates	Lat. (^o)	48.816	Long. (^o)	-128.666	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F034938	Metagenome / Metatranscriptome	173	Y
F099352	Metatranscriptome	103	Y

Family

Category

Number of Sequences

3D Structure?

F034938

Metagenome / Metatranscriptome

173

F099352

Metatranscriptome

103

Scaffold	Taxonomy	Length	IMG/M Link
Ga0186355_108266	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	1152	Open in IMG/M
Ga0186355_108610	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	1109	Open in IMG/M
Ga0186355_109277	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	1030	Open in IMG/M
Ga0186355_109671	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	984	Open in IMG/M
Ga0186355_109747	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	976	Open in IMG/M
Ga0186355_113488	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	602	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0186355_108266

All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema

1152

1109

1030

984

976

602

Scaffold ID	Protein ID	Family	Sequence
Ga0186355_108266	Ga0186355_1082661	F034938	PHSISLIHNPNQQHITMMNAAAFPNAQRMHYEGAASSSTGGGGAGHRTMINEAIILPKISADDQLAQRDDEEESTNANATNMVLWRGNLVAEKEAMALRHVFDDMQDHFGHQRADPRVRFNANLVRPSRDGMWFGDLDFTYNINGEHCNLGYIGMDVCVDLCPKLVHKHGQLRLKNYGKSWVYVYLPQLTLDKFKSYVKTGTGWDVSNEGTVYDPNRNLVAIEAQLHHQTGQPKPSFWAVKDKDAPGDMSFSRIGTVQEVNEHPHQQRVHRGVGIFSVSMEVEGSPNFKPTPRAGDKANLCFTLVSVRTWGVTDCVAPIVHAPNKWY
Ga0186355_108610	Ga0186355_1086101	F034938	GRDIAHNIRNGHCLSIPQPPINIMMMHYTTNNTTDGSSERLSLYPAYSKTAPQPPAHVIRNIADHNNQMAAASRDDEETVADAANTLAEWRGNTVPEKEAKALRHVFDDLQDHFGYQRVDPRVRFNNTNLARLGNGGTWFGDLDFTYDIKGDHCNLAYIGMDVCVDLTPKLVHKHGQPMLKDYGKSWVYVYLRQLTLDKVKSYVKTGTGWDVSDDGTVFDPNRNLVAIEAKMSNQTGQPKPSVWVAKDKNASEQDMSFSRIGTVQDVSSHPSQQRIHRGVGIFSVSMEVEGGPNVRPTPGMGCEANLCFTLVSLRTWGITDCVAPIVHAPSKWY
Ga0186355_109277	Ga0186355_1092771	F034938	MHKMAANEANVNIAAQNEQAGHIDVDEDPNMVLWRGNLVSEKEAKALRHVFDNLQDHFGHQRPDPRVRFNHESLAHPGHGQKWHGDVDFTYDIDGDHCKLNYIGMDVCIDLAPKLVHKHGQPLLNDYGSTWLYVYLPKLSIDRVKSFMKAGTGWDVSDEGFIDDTNRNMVAIKVKLCNESGQPEPSFWVVKDNDASEGRGGMSFSRIGSVQEVAAQPHQKRIHRGIGIFTISMEVDGTSNLEPTPGTWDEANLSFTLVSARTWGVTDCVAPIVYAPSKRHLN
Ga0186355_109671	Ga0186355_1096711	F034938	ATHSACTLLVSQTSSQRHQTMTSITQSETNYASGHWQKNLVSESMGSEAANVIPNIADQRGDHNEEETMVQWRGNLVAEKEAKALRHVFDDLQDHFGHQRPDPNVRFEANLTHPGHGGVWQADLDFTYNIKGEHCKLAYIGMDMCLDLTPKKIHKYGRPMLNDYGESWVYAYLPDMTMDKIKSYVKAGTGWDVSAAGTVVDPNRNLVAIKATLNNQAEQPKPSFWVVTEKDSAQDDVSFSRIGSVQDVHSDTSQKRIHRGVGIFSVSMEVEGTPNFKPSSHSGEVASLVFTXXXX
Ga0186355_109747	Ga0186355_1097471	F034938	ATHSACTLLVSQTSSQRHQTMTSITQSETNYASGHWQKNLVSESMGSEAANVIPNIADQRGDHNEEETMVQWRGNLVAEKEAKALRHVFDDLQDHFGHQRPDPNVRFEANLTHPGHGGVWQADLDFTYNIKGEHCKLAYIGMDMCLDLTPKKIHKYGRPMLNDYGESWVYAYLPDMTMDKIKSYVKAGTGWDVSAAGTVVDPNRNLVAIKATLNNQAEQPKPSFWVVTEKDSAQDDVSFSRIGSVQDVHSDTSQKRIHRGVGIFSVSMEVEGTPNFKPSSHSGEVASLVFTLVSVRTWGITDCIAPIVHAPMM
Ga0186355_113488	Ga0186355_1134881	F099352	MVFNGAEAFKGASAPSLEREVSVTSNNNRVLLDSQELNAASGAFNLCCGEAYARFSELKRLKVHPGNMTKERDAVESCSANVYNGIKASCVEQFDAVKSCLSDNPDVWAKCASMRRELEVCSVKNNLGELKKLSS

Scaffold ID

Protein ID

Family

Sequence

Ga0186355_108266

Ga0186355_1082661

F034938

PHSISLIHNPNQQHITMMNAAAFPNAQRMHYEGAASSSTGGGGAGHRTMINEAIILPKISADDQLAQRDDEEESTNANATNMVLWRGNLVAEKEAMALRHVFDDMQDHFGHQRADPRVRFNANLVRPSRDGMWFGDLDFTYNINGEHCNLGYIGMDVCVDLCPKLVHKHGQLRLKNYGKSWVYVYLPQLTLDKFKSYVKTGTGWDVSNEGTVYDPNRNLVAIEAQLHHQTGQPKPSFWAVKDKDAPGDMSFSRIGTVQEVNEHPHQQRVHRGVGIFSVSMEVEGSPNFKPTPRAGDKANLCFTLVSVRTWGVTDCVAPIVHAPNKWY

Ga0186355_108610

Ga0186355_1086101

F034938

GRDIAHNIRNGHCLSIPQPPINIMMMHYTTNNTTDGSSERLSLYPAYSKTAPQPPAHVIRNIADHNNQMAAASRDDEETVADAANTLAEWRGNTVPEKEAKALRHVFDDLQDHFGYQRVDPRVRFNNTNLARLGNGGTWFGDLDFTYDIKGDHCNLAYIGMDVCVDLTPKLVHKHGQPMLKDYGKSWVYVYLRQLTLDKVKSYVKTGTGWDVSDDGTVFDPNRNLVAIEAKMSNQTGQPKPSVWVAKDKNASEQDMSFSRIGTVQDVSSHPSQQRIHRGVGIFSVSMEVEGGPNVRPTPGMGCEANLCFTLVSLRTWGITDCVAPIVHAPSKWY

Ga0186355_109277

Ga0186355_1092771

F034938

MHKMAANEANVNIAAQNEQAGHIDVDEDPNMVLWRGNLVSEKEAKALRHVFDNLQDHFGHQRPDPRVRFNHESLAHPGHGQKWHGDVDFTYDIDGDHCKLNYIGMDVCIDLAPKLVHKHGQPLLNDYGSTWLYVYLPKLSIDRVKSFMKAGTGWDVSDEGFIDDTNRNMVAIKVKLCNESGQPEPSFWVVKDNDASEGRGGMSFSRIGSVQEVAAQPHQKRIHRGIGIFTISMEVDGTSNLEPTPGTWDEANLSFTLVSARTWGVTDCVAPIVYAPSKRHLN

Ga0186355_109671

Ga0186355_1096711

F034938

ATHSACTLLVSQTSSQRHQTMTSITQSETNYASGHWQKNLVSESMGSEAANVIPNIADQRGDHNEEETMVQWRGNLVAEKEAKALRHVFDDLQDHFGHQRPDPNVRFEANLTHPGHGGVWQADLDFTYNIKGEHCKLAYIGMDMCLDLTPKKIHKYGRPMLNDYGESWVYAYLPDMTMDKIKSYVKAGTGWDVSAAGTVVDPNRNLVAIKATLNNQAEQPKPSFWVVTEKDSAQDDVSFSRIGSVQDVHSDTSQKRIHRGVGIFSVSMEVEGTPNFKPSSHSGEVASLVFTXXXX

Ga0186355_109747

Ga0186355_1097471

F034938

ATHSACTLLVSQTSSQRHQTMTSITQSETNYASGHWQKNLVSESMGSEAANVIPNIADQRGDHNEEETMVQWRGNLVAEKEAKALRHVFDDLQDHFGHQRPDPNVRFEANLTHPGHGGVWQADLDFTYNIKGEHCKLAYIGMDMCLDLTPKKIHKYGRPMLNDYGESWVYAYLPDMTMDKIKSYVKAGTGWDVSAAGTVVDPNRNLVAIKATLNNQAEQPKPSFWVVTEKDSAQDDVSFSRIGSVQDVHSDTSQKRIHRGVGIFSVSMEVEGTPNFKPSSHSGEVASLVFTLVSVRTWGITDCIAPIVHAPMM

Ga0186355_113488

Ga0186355_1134881

F099352

MVFNGAEAFKGASAPSLEREVSVTSNNNRVLLDSQELNAASGAFNLCCGEAYARFSELKRLKVHPGNMTKERDAVESCSANVYNGIKASCVEQFDAVKSCLSDNPDVWAKCASMRRELEVCSVKNNLGELKKLSS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300016904: Metatranscriptome of marine eukaryotic communities from North Pacific Ocean in Standard Aquil medium with 100 uM EDTA, 12 C, 32 psu salinity and 428 ?mol photons light - Skeletonema marinoi UNC1201 (MMETSP1428)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences