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Sample 3300016902
3300016902: Metatranscriptome of coastal eukaryotic communities from Pacific Ocean in 0.2u filtered seawater with ES enrichments, GLUTAMATE, 15 C, 33 psu salinity and 98 ?mol photons light - Pseudo-nitzschia australis 10249 10 AB (MMETSP0142_2)
Overview
Basic Information
IMG/M Taxon OID 3300016902 Open in IMG/M GOLD Reference Gs0128947 | Gp0212385 | Ga0186673 Sample Name Metatranscriptome of coastal eukaryotic communities from Pacific Ocean in 0.2u filtered seawater with ES enrichments, GLUTAMATE, 15 C, 33 psu salinity and 98 ?mol photons light - Pseudo-nitzschia australis 10249 10 AB (MMETSP0142_2) Sequencing Status Permanent Draft Sequencing Center National Center for Genome Resources Published? N Use Policy Open
Dataset Contents
Total Genome Size 29552822 Sequencing Scaffolds 2 Novel Protein Genes 3 Associated Families 3
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 2
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Location Information
Location Pacific Ocean Coordinates Lat. (o ) 36.60369 Long. (o ) -121.88927 Alt. (m) N/A Depth (m) 5 Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F075635 Metatranscriptome 118 Y F080841 Metagenome / Metatranscriptome 114 Y F098604 Metagenome / Metatranscriptome 103 Y
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0186673_108357 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 1477 Open in IMG/M Ga0186673_113786 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 676 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0186673_108357 Ga0186673_1083572 F080841 MCKISFSSLIAAVFFVIGNALTIAYYVKEFQRSHFNYLEYTSLDPGYIQVEWGFRVMNRPLYLSAGIMNVIAWFFLMFPIIHLSWILSQGGTKWIGLHIAIGVLILTGSLTEWISHILYIGASLTSELMAREFNLDNWITSNSEDEIGWRALEMTHIVTYGFISAIGAIEWLILSVVMVLIHISVKRWRRNVDATTFGACWNALGLFVALMCILEFTAEVLRLEGFRTFAKIAFWYSSVNRLILIPTWLILLGARLPYASLKLNQQSHMREQESPLVSE Ga0186673_113046 Ga0186673_1130461 F098604 MAPLTKEFCLSLTSFDDEIDQPKTIIAPLSECRIAAPRQVSFGADVYVYEVLNRGDYTPEEIEESWFNRNDMRRMKQGTRAEAKLVESGLLVQGKEVSIRGLESRTRDGIRRKRRNRMNAYGAVFFEIDCQDEERFVDEKLIADAYFVYSENCAMEAQMIGKRDEHDAMQIFQNKTNDFFGKKFCQSIVDLSTTNGSLASSAA Ga0186673_113786 Ga0186673_1137861 F075635 MDTKQASSKLEVIKVDAEYATYDKEPKRGHVICGCCCDARTACLVVNVIALTFAGLGLISLAPQMDRPGFERFGFFIAVFVLGIIANALGVYGALKFKKIFVLIAAVWFGLEAILSVVLFLDFVGSAFAIFFLYPHIMFFKELQDGVMSQENYVREKDCCGACC
