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Sample 3300016887
3300016887: Metatranscriptome of marine eukaryotic communities from North Atlantic Ocean in L1 medium with natural Eastern Pacific seawater, no silica (Eastern Pacific), 21 C, 35 psu salinity and 419 ?mol photons light - micromonas sp. RCC451 (MMETSP1400)
Overview
Basic Information
IMG/M Taxon OID 3300016887 Open in IMG/M GOLD Reference Gs0128947 | Gp0212081 | Ga0186369 Sample Name Metatranscriptome of marine eukaryotic communities from North Atlantic Ocean in L1 medium with natural Eastern Pacific seawater, no silica (Eastern Pacific), 21 C, 35 psu salinity and 419 ?mol photons light - micromonas sp. RCC451 (MMETSP1400) Sequencing Status Permanent Draft Sequencing Center National Center for Genome Resources Published? N Use Policy Open
Dataset Contents
Total Genome Size 20063319 Sequencing Scaffolds 3 Novel Protein Genes 3 Associated Families 1
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Mamiellaceae → Micromonas 1 All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon 2
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Location Information
Location North Atlantic Ocean Coordinates Lat. (o ) N/A Long. (o ) N/A Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F062730 Metagenome / Metatranscriptome 130 N
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0186369_100816 All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Mamiellaceae → Micromonas 3863 Open in IMG/M Ga0186369_101277 All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon 3252 Open in IMG/M Ga0186369_102034 All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon 2617 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0186369_100816 Ga0186369_1008162 F062730 MCDTYNMGTETPVGYRLVRVGVRGRVPTLHTRAPEDLTTRQKYDLRYREKHRAKLLAYHREYYRKKRKLY Ga0186369_101277 Ga0186369_1012771 F062730 MGTETPVGYRLVRVGVRGRVPTLHTRAPEDLTTRQKYDLRYREKHRAKLLAYHREYYRKGKCQTR Ga0186369_102034 Ga0186369_1020341 F062730 MCDTYNMGTETPVGYRLVRVGVRGRVPTLHTRATEDLTSQQKYDLRYREKLLAYHREYYR
