NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300016878

3300016878: Metatranscriptome of marine eukaryotic communities from Antarctic Ocean in modified f/2 medium with seawater, 3 C, 33.6 psu salinity and 349 ?mol photons light - Chaetoceros debilis MM31A-1 (MMETSP0150)



Overview

Basic Information
IMG/M Taxon OID3300016878 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0212316 | Ga0186604
Sample NameMetatranscriptome of marine eukaryotic communities from Antarctic Ocean in modified f/2 medium with seawater, 3 C, 33.6 psu salinity and 349 ?mol photons light - Chaetoceros debilis MM31A-1 (MMETSP0150)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size29890470
Sequencing Scaffolds2
Novel Protein Genes2
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSouthern Ocean
CoordinatesLat. (o)-49.6Long. (o)2.1Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079510Metagenome / Metatranscriptome115Y
F096567Metagenome / Metatranscriptome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186604_106705All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta1598Open in IMG/M
Ga0186604_107272All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi1509Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186604_106705Ga0186604_1067051F079510MKFSTFTIIIATAYYPSSVVGSSQCVVPLPLNADDFNQPDWATIIEGVFPTWAVPEGGCPRLDKVGGSLVANYTDFPVAEEGKFNPCYYTKAFAGLDPKYGGYPTPIDTHYHYEFAAPFFGQPGDGSTHHCPMNADPSTKIQSCPKIAPKCDGEGGACNKITDDYGIGHVPPFVPLAAVKNAYFGCGEDVCKWFSDKVNPCNIPKDVVDRLVVEYFGTEAGNIQFTGPVLGNDLPVVDNPKSTYYKLEYGGDAEACADNNCRGPHYCSKEAATEDVWGDFCPYIHTGENAGLYRHPHLALAALELWIANKCIGPAICPMTWLDSPNGKKNDYGDKMKSTSITWAEMDDNNDPIAQPAVPYKWPNAGDGIFPGHELYGDMLIKPAGGTYVTKYVAMGSKRMDDHDQTSGASFFGGLASSIVMISSTIAVYLLV
Ga0186604_107272Ga0186604_1072721F096567MVKLSTLFVFSSFPAAILGSSLEAQKNKELRGVGERKLKSVKTPKGMKSPKGMKSPKSPPGTKLPEIGSVINNAFPMWEIDEGGNRVNVKECTPNSCEWNPFYVTKRYDGLHPDFGGHPTDFDVKYAFFFASPFGGQPYSGTPHHCSRNAPDDIKAKDCAKIETTTDKGASGPGHVPPHIALASLTWGVENGQFSMEEIFDYDIHHCRVIPHVLFDMIRYYFPRVEGEKVAYPPPITAEGGDFQYEFPSGNGLDNQEPPYAPGPPHWCTPDMAASGHWDGVCPYVFEGPDAGKYRHPHIAYAALEVYLANIAMPDKCAKTWLQNNPDFLDLDRITTDTPFPVMSNDSYARDTVQNWLGQPVLPWDYASDGPKAVEGVFATQVYFS
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