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Sample 3300016873
3300016873: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in modified f/2 media, 18 C, 32 psu salinity and 255 ?mol photons light - Vaucheria litorea CCMP 2940 (MMETSP0945)
Overview
| Basic Information |
| IMG/M Taxon OID | 3300016873 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0128947 | Gp0212217 | Ga0186505 |
| Sample Name | Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in modified f/2 media, 18 C, 32 psu salinity and 255 ?mol photons light - Vaucheria litorea CCMP 2940 (MMETSP0945) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | National Center for Genome Resources |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 12009075 |
| Sequencing Scaffolds | 1 |
| Novel Protein Genes | 1 |
| Associated Families | 1 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| Not Available | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Location Information |
| Location | Atlantic Ocean |
| Coordinates | Lat. (o) | N/A | Long. (o) | N/A | Alt. (m) | N/A | Depth (m) | .1 |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F018377 | Metagenome / Metatranscriptome | 235 | Y |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0186505_103838 | Ga0186505_1038381 | F018377 | QKQVMLKAVFLSLALVAVACAAPTKSIDTYISPPTTVVNPISSNATVKYVKHHHRATLNFACPVDRITVTPNFDNFAVGFEDPLTQIELEDHIGEPSNIEWAHVMQMHFETTDPRGQERQLGTVGGDLGEMLLVLSAIEAQTGKEFTKVEVDRLFKLYLTVMSREKFYYSIDAIENLKQACGCPQLNIADPPEAKKQILLNSTHTAGSHGDEFFKKMINDPAPFNVRKQLIHHTTDAFYNVMWNKTSPLHRRVKFVLVKGELDPKGFILIKTPGYCNAQLLAPMISPELCNKQMGIYHGDAAVLLRTEIAGVLLSKTPEEKNAVVRKANELAATALSTLLSDHNEPV |
