NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300016859

3300016859: Metatranscriptome of freshwater eukaryotic communities from Lake Texoma, Oklahoma in f/2 medium with seawater, f/200 phosphorous, 18 C, 18 psu salinity and 626 ?mol photons light - Prymnesium parvum Texoma1 (MMETSP0007)



Overview

Basic Information
IMG/M Taxon OID3300016859 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0212357 | Ga0186645
Sample NameMetatranscriptome of freshwater eukaryotic communities from Lake Texoma, Oklahoma in f/2 medium with seawater, f/200 phosphorous, 18 C, 18 psu salinity and 626 ?mol photons light - Prymnesium parvum Texoma1 (MMETSP0007)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size15880498
Sequencing Scaffolds10
Novel Protein Genes13
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Isochrysidaceae → Chrysotila → Chrysotila carterae1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina1
All Organisms → cellular organisms → Eukaryota1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater lake biome → freshwater lake → lake water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationUSA: Lake Texoma, Oklahoma
CoordinatesLat. (o)33.98Long. (o)-96.67Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010978Metagenome / Metatranscriptome296Y
F012191Metagenome / Metatranscriptome282Y
F015559Metagenome / Metatranscriptome253Y
F017834Metatranscriptome238Y
F019484Metagenome / Metatranscriptome229Y
F043734Metagenome / Metatranscriptome155Y
F056250Metagenome / Metatranscriptome137N
F057823Metatranscriptome135N
F067275Metatranscriptome125N
F071920Metagenome / Metatranscriptome121Y
F080844Metagenome / Metatranscriptome114N
F094737Metatranscriptome105N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186645_100605Not Available1740Open in IMG/M
Ga0186645_104087All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Isochrysidaceae → Chrysotila → Chrysotila carterae1008Open in IMG/M
Ga0186645_104366All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii982Open in IMG/M
Ga0186645_105505All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila891Open in IMG/M
Ga0186645_106391All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica826Open in IMG/M
Ga0186645_107869All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii733Open in IMG/M
Ga0186645_108111All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina719Open in IMG/M
Ga0186645_108372All Organisms → cellular organisms → Eukaryota703Open in IMG/M
Ga0186645_109088All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi664Open in IMG/M
Ga0186645_111978All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi524Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186645_100605Ga0186645_1006052F019484YFLTILGGSLKKIAKKITTRVPISRNVYTNASIILFN
Ga0186645_102013Ga0186645_1020132F010978RRGAMAGNPFERTSVQILLVAALVALFANSAVDRTDDGLPWEITLTGFCVFAVVFSAIYANRTEVALSIICIILCIVPTYFVHNFEVPCSNWELGSKFSLSTTKSQLLDGVFRMEPNASRFDKFLPLGLSMYSLSMFNPGIAIKCNTSEIYHSGIKLDDAAGEKTHDYLLLSSPRKVKSSTTGIMLLARVPVSIELWPAGIEDYSFNLQTASNIIAPPTVVGELMPLDKGPAIEHLKKKHHLRPFLIDVYRVDYHFGGD
Ga0186645_104087Ga0186645_1040871F071920AVSGMLVLPAIAAATPRFNNSKCPHYWELQAPRVASSFDFSRDVPGLYYELAFHDWTQRPLCPTPPRCITSLKQVRTHADGVRYVNDTWRLQCFGRAYPQTLLFNQTEARGALRGYVPTTRIPFLPESIAAGLVFPDTIVDFKRGAEGWLLEVQCVEALGGVRFVGINFYSKTKTEAAFQEMHQAALDRGLGFWMDSRPWGLSRVNHTDCPDEPHDVLEA
Ga0186645_104366Ga0186645_1043661F015559MSHKLGSATKVGDALPNVEVHIGFAGLSPTNAKMTGDLAKGKTLWVGLPGAFTPT
Ga0186645_105505Ga0186645_1055051F067275DHTMAEEVTAQAEFPWAKLGTDWKQVKGTGKVIASGMLAEERCAVSSIHVAHGVRYFMFNINTSALPDGHMFLGVAAFNGGSTDFQAPCKTWAFNPPTGNLYIGEKIDEHGSEQMKKHFFADKDESLLDRMPGSTCLAKVDMDAKTLEFSINGNEFIDAGVTLPDEGVRPFCFLYHENDSITLTEVDASGFGSGGVSRPSTAGTDSGIA
Ga0186645_106391Ga0186645_1063911F057823TQQFVSRTGSSRGVYKRNGEIMAVPHPSAEASWAQNEKTAAHGITASTMKDSFKDPNLKAALTPYHPNAQRSRLPVSFKNEAKPYKRFCQVRNQQTYDFFDKGASGAGFVRFRTTSQNYYDYDTKALSVGESNQGIVSEKSKWIHQKQTM
Ga0186645_107869Ga0186645_1078691F056250LPNLVLLVGLTNGYIVAVDFGALIKLQQSHKLPDRVSAMGTTRVFNDYLQDLSAFYTNSTGQRVACCGDTAVKIIHRTGVDLEVHLEVALDRKPKVGEYLDKVEWDDSAKAFACSSTDGYLYVHELLD
Ga0186645_108111Ga0186645_1081111F094737QMVLSDSEAISRGFADERTGRIRTFQAGPDGPPGLDSQLCGFGAPRPTEVAKEVPLIEGRMKMFPGKHSSVGSVKEAVATGCPAIVHMQMDSDQWMSTYRATIDERQPTFRKGREGKKMVDALFGAKELYRPPREVYVEPKGAPPTAVRDMRVYKHMGTLSKAGQW
Ga0186645_108235Ga0186645_1082351F080844ETKAAEVQGMAAPETPGYVVGAVTTRLTVTVPHGIVGGELVRVAAPDGSYHSIMVPAGLTAGQQFSVELLAGSNAVDIAKLKMELDAERALRRETQQEALRCRTALEEVQQKRMADHAFFRDMIKRQRRSIEHLGQQVET
Ga0186645_108236Ga0186645_1082361F080844MAAPETPGYVVGAVTTRLTVTVPHGIVGGELVRVAAPDGSYHSIMVPAGLTAGQQFSVELLAGSNAVDIAKLKMELDAERALRRETQQEALRCRTALEEVQQKRMADHAFFRDMIKRQRRSIEHLGQQVET
Ga0186645_108372Ga0186645_1083721F012191SIVFAKLYIPFALAPESMSFSRMSALAKTMDRAAARGMGAGMGGGGHANNPVFMFQADWAKNKHKGFIFVFGIFGLGCLIPYKLVSFAQSKAGVQW
Ga0186645_109088Ga0186645_1090881F017834QPTHSVRPQSHMGKGKGVASFDLATALTKKETRTMRKSECMIQYHLARMPMYGAYESAQYAKANELRENMKNLEMKAKERWERGHV
Ga0186645_111978Ga0186645_1119781F043734VSECTSWRQMNSFRAKQLLQPAARWGMTLGVVGFFLMYEDLPQLILQTPYGNFPGWEGVARHYGLLKPKE
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