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Sample 3300016855
3300016855: Metatranscriptome of marine eukaryotic communities from unknown location in ASW medium with 2.5 mg/L nocodazole, at 20 C, 30 psu salinity and 746 ?mol photons light - Tryblionella compressa CCMP 561 (MMETSP0747)
Overview
Basic Information
IMG/M Taxon OID 3300016855 Open in IMG/M GOLD Reference Gs0128947 | Gp0211912 | Ga0186200 Sample Name Metatranscriptome of marine eukaryotic communities from unknown location in ASW medium with 2.5 mg/L nocodazole, at 20 C, 30 psu salinity and 746 ?mol photons light - Tryblionella compressa CCMP 561 (MMETSP0747) Sequencing Status Permanent Draft Sequencing Center National Center for Genome Resources Published? N Use Policy Open
Dataset Contents
Total Genome Size 21486909 Sequencing Scaffolds 1 Novel Protein Genes 1 Associated Families 1
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Location Information
Location Coordinates Lat. (o ) N/A Long. (o ) N/A Alt. (m) N/A Depth (m) 0 Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F045520 Metagenome / Metatranscriptome 152 Y
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0186200_104455 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102 1558 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0186200_104455 Ga0186200_1044552 F045520 RLYKQIETLIRTDDEVADSIPCKSDILSLRECRKGGKTCDDLGLELLRCMAQYKVDTTEKIRQAIGVAKYNEYVKAMVEKHGKEKAEEIIAEPSEQLKDIEAYQVLHRVANNTHPKGAPKTAEGIKEWTYADQVRLEMGEQEWWDAVKIVGCEFGVEKADALFGLAKEKELIESAQDRLVPGLKEKRAQGLEAYKKVEASVKEAAPGAKSPADYAAAFKDLYPTKEDLESALK
