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Sample 3300016853
3300016853: Metatranscriptome of marine eukaryotic communities from Saldanha Bay in L1 medium with natural Eastern Pacific seawater, no silica (Eastern Pacific), 21 C, 35 psu salinity and 627 ?mol photons light - Micromonas pusilla CCAC 1681 (MMETSP1401)
Overview
Basic Information
IMG/M Taxon OID 3300016853 Open in IMG/M GOLD Reference Gs0128947 | Gp0211960 | Ga0186248 Sample Name Metatranscriptome of marine eukaryotic communities from Saldanha Bay in L1 medium with natural Eastern Pacific seawater, no silica (Eastern Pacific), 21 C, 35 psu salinity and 627 ?mol photons light - Micromonas pusilla CCAC 1681 (MMETSP1401) Sequencing Status Permanent Draft Sequencing Center National Center for Genome Resources Published? N Use Policy Open
Dataset Contents
Total Genome Size 16858591 Sequencing Scaffolds 4 Novel Protein Genes 4 Associated Families 1
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Mamiellaceae → Micromonas 1 All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Mamiellaceae → Micromonas → Micromonas pusilla 3
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Location Information
Location Saldanha Bay Coordinates Lat. (o ) N/A Long. (o ) N/A Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F021976 Metagenome / Metatranscriptome 216 Y
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0186248_102821 All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Mamiellaceae → Micromonas 1956 Open in IMG/M Ga0186248_103207 All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Mamiellaceae → Micromonas → Micromonas pusilla 1805 Open in IMG/M Ga0186248_104809 All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Mamiellaceae → Micromonas → Micromonas pusilla 1351 Open in IMG/M Ga0186248_107584 All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Mamiellaceae → Micromonas → Micromonas pusilla 810 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0186248_102821 Ga0186248_1028212 F021976 MVAKASGSAKRRARKLKRDVAAQAGVAFPGLPFDVAVSLVEKHLPDPADLAVLRAVSKGMRDAVDA Ga0186248_103207 Ga0186248_1032072 F021976 VTTRAVRASPAAMVAKASGSAKRRARKLKRDVAAQAGVAFPGLPFDVAVSLVEKHLPDPADLAVLRAVSKGMRDAVDA Ga0186248_104809 Ga0186248_1048091 F021976 MRTVRAASALMVAEASRGVETRARKRKRDLDSQAGVAIPGLPFDVAVSLVEKHLPDPADLAVLR Ga0186248_107584 Ga0186248_1075842 F021976 MRTVRAASALMVAEASRGVETRARKRKRDLDSQAGVAIPGLPFDVAVSLVEKHLPDPADLAVLRAVS
