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Sample 3300016850
3300016850: Metatranscriptome of marine eukaryotic communities from unknown location in ASW medium w/o silicate, at 20 C, 30 psu salinity and 743 ?mol photons light - Tryblionella compressa CCMP 561 (MMETSP0745)
Overview
Basic Information
IMG/M Taxon OID 3300016850 Open in IMG/M GOLD Reference Gs0128947 | Gp0211913 | Ga0186201 Sample Name Metatranscriptome of marine eukaryotic communities from unknown location in ASW medium w/o silicate, at 20 C, 30 psu salinity and 743 ?mol photons light - Tryblionella compressa CCMP 561 (MMETSP0745) Sequencing Status Permanent Draft Sequencing Center National Center for Genome Resources Published? N Use Policy Open
Dataset Contents
Total Genome Size 21090087 Sequencing Scaffolds 4 Novel Protein Genes 4 Associated Families 4
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta 1 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria 1 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae 1 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Lithodesmiophycidae → Lithodesmiales → Lithodesmiaceae → Ditylum → Ditylum brightwellii 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Location Information
Location Coordinates Lat. (o ) N/A Long. (o ) N/A Alt. (m) N/A Depth (m) 0 Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F012917 Metagenome / Metatranscriptome 276 Y F045520 Metagenome / Metatranscriptome 152 Y F078213 Metagenome / Metatranscriptome 116 Y F082263 Metagenome / Metatranscriptome 113 Y
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0186201_100272 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta 3806 Open in IMG/M Ga0186201_101932 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria 2251 Open in IMG/M Ga0186201_108878 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae 930 Open in IMG/M Ga0186201_112860 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Lithodesmiophycidae → Lithodesmiales → Lithodesmiaceae → Ditylum → Ditylum brightwellii 563 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0186201_100272 Ga0186201_1002722 F082263 MFSSHMFINIIFLLLIDLLLFYFLPRLALSSIPDERRTEAVQEWAGAVSDMVQNEVELDAWCVERSIVSIRVAKQGGEGWLNMSELRDLYRWMSMDVSSLVTEASAEEKESLSKPAYIGQPVDVAESHAIVRVALGVDSLLSYFDNKVGTLEEDKATVQKLAAIAKHFNTLKKSGM Ga0186201_101932 Ga0186201_1019321 F012917 LFKFLRFPLNDCGYYDKYSSLSEVNQVWDRKKHLKRKRWSQE Ga0186201_108878 Ga0186201_1088781 F045520 MAFNRLYKQIETLIRTDDEVADSIPCKSDILSLRECRKGGKTCDDLGLELLRCMAQYKVDTTEKIRQAIGVAKYNEYVKAMVVKHGKEKAEEIIAEPSEQLKDIEAYQVLHRVANNTHPKGAPKTAEGMKEWTYADQVRLEMGEQEWWDAVKIVGCEFGVEKADALFGLAKEKELIESAQDRLVPGLKEKRAQGLEAYKKVEASVKEAAPGAKSPADYAAAFKDLYPTKEDLESALK Ga0186201_112860 Ga0186201_1128601 F078213 GTGEAAAQFASQLDIDPSLCFGDDGGAVGESIGLEKGFKTMWNPPAVDNMMARNDEQSLKALGEAYKGAVDAIGFQNLAPKKIQDTLRQGGTFVFKGDRPLLDHVDAKVGDNCEIEDILFVLN
