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Sample 3300016840
3300016840: Metatranscriptome of coastal eukaryotic communities from Atlantic Ocean in f/2 medium with seawater, 14 C, 35 psu salinity and 460 ?mol photons light - Thalassiosira gravida GMp14c1 (MMETSP0492)
Overview
Basic Information
IMG/M Taxon OID 3300016840 Open in IMG/M GOLD Reference Gs0128947 | Gp0212412 | Ga0186700 Sample Name Metatranscriptome of coastal eukaryotic communities from Atlantic Ocean in f/2 medium with seawater, 14 C, 35 psu salinity and 460 ?mol photons light - Thalassiosira gravida GMp14c1 (MMETSP0492) Sequencing Status Permanent Draft Sequencing Center National Center for Genome Resources Published? N Use Policy Open
Dataset Contents
Total Genome Size 17345463 Sequencing Scaffolds 4 Novel Protein Genes 4 Associated Families 2
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica 1 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi 3
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Location Information
Location Atlantic Ocean Coordinates Lat. (o ) 41.92732 Long. (o ) -67.85788 Alt. (m) N/A Depth (m) 10 Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F051162 Metagenome / Metatranscriptome 144 Y F067805 Metagenome / Metatranscriptome 125 Y
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0186700_100326 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica 2690 Open in IMG/M Ga0186700_104251 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi 1270 Open in IMG/M Ga0186700_105967 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi 1070 Open in IMG/M Ga0186700_106119 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi 1054 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0186700_100326 Ga0186700_1003261 F051162 MPLVKIFARVGMNKAIPLKTLQSQMCKIWSTKPETTKLILSRVEDWTSESYDEDCYIDIRAYGKSERTREFVLDGMTQIQQAFAEHDLIANVRLETYEGERYFHVPPKK Ga0186700_104251 Ga0186700_1042512 F067805 MGRKQPKEEELALSKKEQKKVDKLTAQIPYHQGRGNMEEVTKIKGQIDSIWEKAKEAQFA Ga0186700_105967 Ga0186700_1059672 F067805 MGRKQPKEEELTLSKKEKKKVDKLTAQIPYHQGRGNMEEVTKIKGQIDSIWEKAKEAQFA Ga0186700_106119 Ga0186700_1061191 F067805 MGRKQPKEEVLTLSKKDKKKVDKLTSQIPYHQGRGNMEEVTKIKGQIDSIWEKAKEAQFA
