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Sample 3300016816
3300016816: Metatranscriptome of coastal eukaryotic communities from Mediterranean Sea in K medium, 20 C, 36 psu salinity and 301 ?mol photons light - Leptocylindrus aporus B651 (MMETSP0322)
Overview
| Basic Information |
| IMG/M Taxon OID | 3300016816 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0128947 | Gp0212395 | Ga0186683 |
| Sample Name | Metatranscriptome of coastal eukaryotic communities from Mediterranean Sea in K medium, 20 C, 36 psu salinity and 301 ?mol photons light - Leptocylindrus aporus B651 (MMETSP0322) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | National Center for Genome Resources |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 21607929 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 3 |
| Associated Families | 2 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| Not Available | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 2 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Location Information |
| Location | Mediterranean Sea |
| Coordinates | Lat. (o) | 40.8083 | Long. (o) | 14.25 | Alt. (m) | N/A | Depth (m) | 2 |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F033284 | Metagenome / Metatranscriptome | 177 | Y |
| F051162 | Metagenome / Metatranscriptome | 144 | Y |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0186683_101596 | Ga0186683_1015961 | F033284 | MLIRRVQCIRRTKEAATQAACAGNTRGYHSEYGNSLFNNREKDDAYYSSSEPVTDEE |
| Ga0186683_102194 | Ga0186683_1021941 | F033284 | MSLKTQTELMIRRVQFIRRTKEAATQAACAGNTRGYHSEYGNSLFNNREKDDAYYSSSEPVTDEE |
| Ga0186683_111400 | Ga0186683_1114001 | F051162 | MPLVEIFARQCMTKVIPLNALQSRMCAIWGTTPETTKLILNRVEDWTTSGLVDEDCYVSIRAKGTEQRTRTIVLDGMKQVQNCFAQEGLIANVRLETYEGERYFHVPPPMKN |
