Sample 3300015216

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300015216

3300015216: Freshwater microbial mat microbial communities from Canadian High Arctic Lake 9K, Kuujjuarapik, Canada - Sample L9Kb

Overview

Basic Information
IMG/M Taxon OID	3300015216 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128895 \| Gp0209314 \| Ga0182875
Sample Name	Freshwater microbial mat microbial communities from Canadian High Arctic Lake 9K, Kuujjuarapik, Canada - Sample L9Kb
Sequencing Status	Permanent Draft
Sequencing Center	Laval University
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	1055569398
Sequencing Scaffolds	12
Novel Protein Genes	12
Associated Families	12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
Not Available	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Microbial Mat Communities From High Arctic Lakes
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lake → Unclassified → Microbial Mat → Microbial Mat Communities From High Arctic Lakes

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → freshwater lake → microbial mat material
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Surface (non-saline)

Location Information
Location	Kuujjuarapik
Coordinates	Lat. (^o)	55.275009	Long. (^o)	-77.758484	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006163	Metagenome	380	Y
F009919	Metagenome	311	Y
F016569	Metagenome / Metatranscriptome	246	Y
F021565	Metagenome / Metatranscriptome	218	Y
F022009	Metagenome	216	Y
F022216	Metagenome / Metatranscriptome	215	Y
F023327	Metagenome / Metatranscriptome	210	N
F024422	Metagenome / Metatranscriptome	206	Y
F034114	Metagenome / Metatranscriptome	175	Y
F039953	Metagenome / Metatranscriptome	162	Y
F093403	Metagenome / Metatranscriptome	106	N
F093898	Metagenome / Metatranscriptome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0182875_10000004	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	5426	Open in IMG/M
Ga0182875_10000417	All Organisms → cellular organisms → Bacteria	2344	Open in IMG/M
Ga0182875_10000426	All Organisms → cellular organisms → Bacteria → Proteobacteria	2335	Open in IMG/M
Ga0182875_10000862	Not Available	1978	Open in IMG/M
Ga0182875_10006069	Not Available	1145	Open in IMG/M
Ga0182875_10022958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	751	Open in IMG/M
Ga0182875_10025946	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	719	Open in IMG/M
Ga0182875_10032015	Not Available	664	Open in IMG/M
Ga0182875_10044174	All Organisms → cellular organisms → Bacteria → Proteobacteria	583	Open in IMG/M
Ga0182875_10044564	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
Ga0182875_10052442	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
Ga0182875_10057220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	522	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0182875_10000004	Ga0182875_100000044	F023327	MQIDFMCAVVESYIYRMKGAQVKIDRMAVATDQRQMAMLMHAYQIAHGDKKHSNL*
Ga0182875_10000417	Ga0182875_100004173	F009919	MFAANLQYKLNQFVTFAVEQSYYRTRSANTTTTSTGGLPIFRGVPAVSTHNNRFEFATIFTF*
Ga0182875_10000426	Ga0182875_100004263	F093403	MNVLGIQLNAPSLMGLIRMLGFTLAAIALVEMADRLNHGVWANEGSLSFIVGGFSGFLLNEAGADFAKHGWRAFALMIGCAVFVYAVFSLVL*
Ga0182875_10000862	Ga0182875_100008624	F034114	MPVIMREVSVAAGAVNENILSGSAFEFARQNSLVSIGIHQAATGGFATINSGSDVIAEEFAPPIATVYPIIPDNMYFSDVAAAGDRLVVRYRNPTGAALVVRVVCQVTAL*
Ga0182875_10006069	Ga0182875_100060691	F021565	MAIKYYAHFLVDQPEPRGLQEYRGVVELDGQPRPNKGMHEATRIIARNFGRSQQDVKVLQWARLH*
Ga0182875_10022958	Ga0182875_100229582	F022009	VLPLVALLWLAAAGLAANAQSNTYTVEIRPTLNDLDIKIEQVAQASTLVVNLTNNSPTRVRCNVNFDASPQTPVRRTRHINPGQTDSNVLRAQRRWRAGQGPWRRVRRSGV*
Ga0182875_10025946	Ga0182875_100259462	F006163	MARDGRARPGAVIVTVPAYLDAVRLVHGVGPAEMARALRVNPSVLRRWARGTLVPSWKRLRAMTGLWGGSPELLALGAALQRYSRATGVPVDEAVRMLRTGWRNGPGRSAVSRPRDRRQLSLPIGG*
Ga0182875_10032015	Ga0182875_100320152	F039953	AVVLANPINSRGRNRVNNMMPEVALEAEGWGNNMIEAYTGNHIGHRASRKRLKVITAP*
Ga0182875_10044174	Ga0182875_100441742	F022216	MPVAEVPGETGQRRRIRRTTLVLALVALGIYVAFIASGVMQARG*
Ga0182875_10044564	Ga0182875_100445641	F024422	PRIVPTRMMLDYQKGGFPAYDIEPEHGVPVPCALGQPWVNEDTQDTLARLRIPRTDPWGNPLPGEPDDQILARFRPKQ*
Ga0182875_10052442	Ga0182875_100524421	F016569	VHNRAGEYFYNAMCAYHWSKSADGTFIAVAPNMVVGVNDKSNRACLAGRYSSQFIERQYPDNYFSLRTLTHISD*
Ga0182875_10057220	Ga0182875_100572202	F093898	MRCLVARAVNPQMNLLDGLREWNGIATALREPPRRRRRYQGDDWDRFLS*

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