NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300014508

3300014508: Marine microbial communities to study oil droplet degradation from Trondheimsfjord, Norway - 0164 : 64 days incubation



Overview

Basic Information
IMG/M Taxon OID3300014508 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121288 | Gp0151326 | Ga0134303
Sample NameMarine microbial communities to study oil droplet degradation from Trondheimsfjord, Norway - 0164 : 64 days incubation
Sequencing StatusPermanent Draft
Sequencing CenterBattelle Memorial Institute, Gulf Coast Restoration Organization
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size35532472
Sequencing Scaffolds7
Novel Protein Genes8
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Seonamhaeicola → Seonamhaeicola aphaedonensis1
All Organisms → Viruses → Predicted Viral1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Eurybiavirus → unclassified Eurybiavirus → Eurybiavirus sp.1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities To Study Oil Droplet Degradation From Trondheimsfjord, Norway
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Microbial Communities To Study Oil Droplet Degradation From Trondheimsfjord, Norway

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → coastal water body → coastal sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationNorway: Trondheimsfjord
CoordinatesLat. (o)63.43Long. (o)10.43Alt. (m)N/ADepth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001728Metagenome / Metatranscriptome645Y
F006242Metagenome / Metatranscriptome378Y
F010172Metagenome / Metatranscriptome307Y
F036781Metagenome / Metatranscriptome169Y
F037124Metagenome / Metatranscriptome168N
F047173Metagenome150Y
F092706Metagenome / Metatranscriptome107Y
F103048Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0134303_100008Not Available36670Open in IMG/M
Ga0134303_100020Not Available23874Open in IMG/M
Ga0134303_100732All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Seonamhaeicola → Seonamhaeicola aphaedonensis3464Open in IMG/M
Ga0134303_105410Not Available1161Open in IMG/M
Ga0134303_106738All Organisms → Viruses → Predicted Viral1017Open in IMG/M
Ga0134303_113538Not Available650Open in IMG/M
Ga0134303_118273All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Eurybiavirus → unclassified Eurybiavirus → Eurybiavirus sp.536Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0134303_100008Ga0134303_1000083F010172MKTLLVTLAALTLVSCTQLNSLEITPDDNAMACLRGNTNAAGAVLGANVSGITVELPAQVDTSGWTADDWKTLAELCD*
Ga0134303_100020Ga0134303_10002051F103048MTLKENEQNEIIFVDKFGENSIHIIHCSETIEEIKEDVATPYIVAEEATNFARVHLVTDFSEDEALQQVDEYLREKEGLEETHLIAVFEAKI*
Ga0134303_100020Ga0134303_10002066F047173MRTIETKVYTIDEHPNPSAVYEWIRDNWHDLNQHSVDEMIDSIKALSNKIGGSFDYSISAVPDRGEFIRFKDYDQEALAELNAGECPLTGVCWDADLIEALQKGDPSKALESIHYNTEHIYSDKGLEELCESNEYEFTEEGNVF*
Ga0134303_100732Ga0134303_1007326F001728MNDFELRKTEEKDYYRLFINGVDVTGKQEKSTFRHLIQTIDNVL*
Ga0134303_105410Ga0134303_1054102F036781TIDFTPVVFWIVTAVIAVIAYEPKAVIVLISAWMPAPPDESDPAITNILDFGFNLFNFS*
Ga0134303_106738Ga0134303_1067382F037124VIEIIAAVSAAGKAFNYIQQAVNKGHEINDLAHKFGAFFDAKDKIGEVEASVDNASAMSKLFAKGSVESAALQITMAKQKTLQMERQLREIITYTVGQEVYVEMLRTRATIRKQRLDAARAKAARKRLIIDGIGFAFIGTILFACVMAVVGVVI*
Ga0134303_113538Ga0134303_1135382F092706MSKEGLRFDWHPILQADFINDLAAEVMSTVEAARTSTRGSSKDAIDVRTQQQLIIAKHLLSALYCAHSTISSKKTLTRISVIKKTDGYSGDKTKYPTRIHYSFRHFSEVYKALEQLNWISIEKGEQGAGYTRIHAKNR
Ga0134303_118273Ga0134303_1182732F006242RLKTEPDAEWHFHELSSDKFPGGFARESDWAVRYKRRNDSPKHKHEYKVELRT*
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