NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300014146

3300014146: Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, USA - P5_16mM MetaG



Overview

Basic Information
IMG/M Taxon OID3300014146 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128781 | Gp0206849 | Ga0180442
Sample NameChrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, USA - P5_16mM MetaG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size88400610
Sequencing Scaffolds8
Novel Protein Genes8
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii8

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameChrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
TypeEngineered
TaxonomyEngineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationUSA: Seattle, Washington
CoordinatesLat. (o)47.6519Long. (o)-122.3113Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007958Metagenome / Metatranscriptome341Y
F025010Metagenome / Metatranscriptome203Y
F043264Metagenome / Metatranscriptome156Y
F069666Metagenome / Metatranscriptome123Y
F082271Metagenome / Metatranscriptome113N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0180442_105840All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii2710Open in IMG/M
Ga0180442_109864All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii1130Open in IMG/M
Ga0180442_111612All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii906Open in IMG/M
Ga0180442_114170All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii690Open in IMG/M
Ga0180442_114467All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii672Open in IMG/M
Ga0180442_115169All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii635Open in IMG/M
Ga0180442_116799All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii558Open in IMG/M
Ga0180442_117326All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii537Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0180442_105840Ga0180442_1058402F043264MPNHRRELQTAVSTSAGLLSALANTGVGRIVLDPGTYFLNAELSVTRSVVIEAAVAGSVVLDAQASSSSRRRVLYINPGSLGVVQLIGLNTTRGYVQGVRGCRRDLLIPHRPNGMPC*
Ga0180442_109864Ga0180442_1098641F007958FINKRRLDVRNLMGGFDRMKKGFFDLATMRRALCNAFGNQWVELAMTQAEFNEVCEPYLTRVPLQNGEPSAMVQWRQLAQDLQMLAETGRPTADFLERLAAVEAKERASVMLEKEYGVSMDELKLAFEYMKQRVEMLSKRGLTDGFRRIDDDHKGSLTAEELKRFFMEEAHCPWYINDRTLWCLCDFADLNNDDEIGFLELSQVLLCQDIIQFAALVPNKKKEAQAEKDNSMKIGSRGCTVAQVREAQRECCNALINRGSGDLRQNNVRSVLAYLDVREDGMITRDEFFEKMKLLKVLKHMTSEKKVKGTIEKAALETMLDIVDEVARIIEEQMPGDQGGAVAAGYLNLAAFAKGCFSTDGFGGFVDVMTIAGIQ*
Ga0180442_111612Ga0180442_1116121F082271RRVRVEQTARRAIKSMSLQSLRAAMNTWVAMSEARQRNQQKLLSAASAFRGDGMRKAWNGWLGLLHDRQVMASAVYCLTHRLQRAGFASWVFAMHGTLKKKKQLRAYMSTLSPAKRSMRKAINSWSEYGHTMWALSRAAAAMRLREERVAFSTWHEHACSDGEREAAMRRAVASMIQSSLRVSLNTWMSYAEEHAEASRVLAGALSSLKPEGRAMRRALNTWAGVMMQRRSMVVAVASLTNSEQLWGLRTWHAHAALVRKRRVRVEQTARRAIKSMSLQSLRAAMNTWVAMSEARQRNQQKL
Ga0180442_114170Ga0180442_1141702F043264VITTAGLTSALANTAVGRIVLAPGTYNLSAELNITRSVVLEAAVAGSVVLNAQASYSSQRRVANINPGPSGVVQVIGLNITGGYVSGFSCNAAG
Ga0180442_114467Ga0180442_1144671F069666SADAMEAALGLVDVATLAELKGVTRSWRALAQRVLCSRLCRRDGQPGPTRLDEITDLDVEQLIEAGRPGDAAVGGRMLPGLARLHGYGHVVDVAAVRAADLQCEMGNSRRPSLLHGAYEVALNSCISGEGEPPLRLTIAAVACAGSGVICGIPVQQLREDSVKELNLSYRGLHVPAAMLVAYLIPATSVLRRCNLLKNSFDVESATKLAKMGAEKGIMLSGMM
Ga0180442_115169Ga0180442_1151691F025010TIVHKFMDDVVFATVRMKEPFSVAHELLICYFREIDFDPARFLHMGNVFRRGGQDTLLSEARRNAAAFFRTCGANPQLDGAKYPGCDTKNLKSEIKPNGKHDDSSKKPCADFNAGRPCRTLKADGSCVFAHKCNQFVSDKGPLGYCLGPHARCTGCTYADDKKLKSPAK*
Ga0180442_116799Ga0180442_1167992F043264VSNVLGLINALGATSFHRIVLAPGRYALSAALSVTRSVVIEAAVAGSVVLNAQASYWSPRRVLNINPGSLGVVQLIGLNITGGDMDGSGGGVYVQ
Ga0180442_117326Ga0180442_1173261F025010TIVHKFMDDVVFATVRMKEPFSVAHELLICYFREIDFDPARVLHMGNVFRRGGQDTLLSEARRNAAAFFRTCGANPQLDGAKYPGRDTKNLKSDLKPNGKHDDSSKKPCADFNAGRPCRTLKADGSCAFAHKCNQFVSDKGPLGYCFGPHARCTGCTYADDKKLKSPAK*
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