NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300014145

3300014145: Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, USA - P5_0mM MetaG



Overview

Basic Information
IMG/M Taxon OID3300014145 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128781 | Gp0206846 | Ga0180439
Sample NameChrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, USA - P5_0mM MetaG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size86920228
Sequencing Scaffolds7
Novel Protein Genes7
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales1
Not Available1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii5

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameChrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
TypeEngineered
TaxonomyEngineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationUSA: Seattle, Washington
CoordinatesLat. (o)47.6519Long. (o)-122.3113Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007958Metagenome / Metatranscriptome341Y
F025010Metagenome / Metatranscriptome203Y
F044865Metagenome / Metatranscriptome153Y
F069666Metagenome / Metatranscriptome123Y
F082271Metagenome / Metatranscriptome113N
F087102Metagenome / Metatranscriptome110N
F098631Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0180439_102199All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales10524Open in IMG/M
Ga0180439_104398Not Available4589Open in IMG/M
Ga0180439_109238All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii1130Open in IMG/M
Ga0180439_111413All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii836Open in IMG/M
Ga0180439_115080All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii580Open in IMG/M
Ga0180439_115775All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii548Open in IMG/M
Ga0180439_116165All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii533Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0180439_102199Ga0180439_1021995F044865MLRTLLGLPPCENLQDSGFEAHFTSNRFLDTPARDDAFALGHHASLSPFCRERSRSRFAPHHRAHDGERPMAAARAANSGGGGGAKFSLLNRGSSKQDGVATGIFADEGRERGSGGSRNPQLTVLPHASDIKWIDQFPYYPAYRYHSYRSYCGACSSILFLTILLLRFSTSIMDFVNRPPIVTEAREQFERDSTITYRLPRVGVQFRQNGWRPFNDPRYLSIIFEQGVIAMSGNVSYVDLGTHECAFVDRDGRLIADGAMCPLASGDAAGYLQGDFHDVTFAFVRARLARCDNGTDVEGKPLPGMCMMPSEIDRLVYDGVLYMFEQETDMRVDESSPFLRIRQWRREFISRVHLSTDVYFTVRKVTVEPKYIFDAYLPGFKAGDSFTLLHSTQETYTDFEEEAAQYAAFYFRLAPELIRQSRSYTSLFDLFETWGAIVAFLYLVFGLTARSFNAFHFNRQVRGLDLRKLDKGQFTPFGRLIDKSFQMPREFQSMTAD*
Ga0180439_104398Ga0180439_1043986F098631MSIAWPVVGDALASQGSLVRVRPASDATTLSLLCSPLGVGRASTHAESEFLAHVTAVHGWVLDFDKEQGAWHVFLFCFLRDIFIPSEHMVVISCIPTSMTFGDLLLANRCGTLRSLVDDSDLEAERAALQVVALHSKLLQLQDEDSSSEFQCVTQVCRYRDFLCSLPADAWLQYVFKPDPSMLPSYLLS*
Ga0180439_109238Ga0180439_1092381F007958FINKRRLDVRNLMGGFDRMKKGFFDLATMRRALCNAFGNQWVELAMTQAEFNEVCEPYLTRVPLQNGEPSAMVQWRQLAQDLQMLAETGRPTADFLERLAAVEAKERASVMLEKEYGVSMDELKLAFEYMKQRIEMLSKRGLTDGFRRIDDDHKGSLTAEELKRFFMEEAHCPWFINDRTLWCLCDFADLNNDDEIGFLELSQVLLCQDIIQFAALVPNKKKEAQSEKDNSMKVGSRGCTVAQVREAQRECCNALINRGSGDARQNNVRSVLAYLDVREDGMITRDEFFEKMKLLKVLKHMTSEKKVKGTIEKAALETMLDIVDEVARIIEEQMPGDQGGAVAAGYLNLAAFAKGCFSTDGFGGFVDVMTIAGIQ*
Ga0180439_111413Ga0180439_1114131F082271MSEARQRSQQALLSAVSAFRGDGMRKAWNGWLGLLHDRQVMASAVYCMSLRLQRTGFASWLAAAEVSQQLRSTLSSLSPAKRSMRKAINSWSEYGNALQSVRRATAALRMREERVAFSTWHEHVCSNCERDAAMRCAVSSMLQSSMRASLNTWMSYAEEHAEASRALAGALSSLQPEGRAMRSALNTWVGVMMQRRSMVVAAASLIRGEQLWGLRTWSAHAPLVRKQRERVEETARRAIKSMSLQSLRAAMNSWAAMSEARQRSQQALLSAVSA
Ga0180439_115080Ga0180439_1150801F069666GQPVPTRLDQITDLDVEQLIEAGRPGDAAVAGRMLPGLARLHGYGYVVDVAAVRAADLQNGAWDTRRPSFLHGTAKDALKRMHCISGEGEPPLELTIAAVACAGSGIVCGIPVQQMREGGVTVLNLSNKGLQVAAAMLVAYLIPATSVVLKNCNLLKNSLDVKSATMLAKIGAEKGIMLSGMTRDQSLAYFSG
Ga0180439_115775Ga0180439_1157751F087102AAGLAKLRPYLDANMSKESADAFQECCGKLFVLSRVHTSMAPEVSFAKVQEITDALSRACSMTSHAAAPLVAGLVTGLKRFVEQRILPNGALDHITKQGFRLPANEVGALLDRYRWPHDAKRTQVLHILRKTLEAVAELRTSSDAAVRGSESIEEARLILNHSHERLVRTMESVLDEHATRA
Ga0180439_116165Ga0180439_1161651F025010ETEAEFYEMSHLFVMTIIALGLASATIVLKFMDDVVFATIRMKETFRVAHELFIIYLREMDFDPARALHMGNVFRRGGQDTLLSEARRNAAASFRTCGGTPQLDGAKKSDAKNPKTDTKPNGKSDDSSKKPCPDFNAGRPCKKLKPDGTCVFAHRCNQFVSDKGPGGYCFGVHARCT
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