NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300014055

3300014055: Sewage treatment plant microbial communities from Vermont, USA - ANOX_W



Overview

Basic Information
IMG/M Taxon OID3300014055 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0116849 | Gp0137220 | Ga0119878
Sample NameSewage treatment plant microbial communities from Vermont, USA - ANOX_W
Sequencing StatusPermanent Draft
Sequencing CenterNorwich University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size417698152
Sequencing Scaffolds24
Novel Protein Genes24
Associated Families24

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales1
Not Available6
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Aquisphaera → Aquisphaera giovannonii1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Pycnogonida → Pantopoda → Nymphonidae → Nymphon → Nymphon striatum1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquabacterium → Aquabacterium pictum1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Crateriforma → Crateriforma conspicua1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSewage Treatment Plant Microbial Communities From Vermont, Usa
TypeEngineered
TaxonomyEngineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Sewage Treatment Plant → Sewage Treatment Plant Microbial Communities From Vermont, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Vermont
CoordinatesLat. (o)43.727094Long. (o)-72.425964Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000676Metagenome / Metatranscriptome941Y
F001844Metagenome / Metatranscriptome627Y
F002571Metagenome / Metatranscriptome547Y
F003544Metagenome / Metatranscriptome480Y
F010528Metagenome / Metatranscriptome302Y
F012885Metagenome / Metatranscriptome276Y
F020930Metagenome / Metatranscriptome221Y
F021521Metagenome / Metatranscriptome218Y
F021596Metagenome / Metatranscriptome218Y
F025842Metagenome / Metatranscriptome200Y
F026489Metagenome197N
F028103Metagenome / Metatranscriptome192Y
F038871Metagenome165Y
F039794Metagenome / Metatranscriptome163Y
F044578Metagenome / Metatranscriptome154Y
F050165Metagenome / Metatranscriptome145N
F050494Metagenome / Metatranscriptome145Y
F054132Metagenome140Y
F057612Metagenome / Metatranscriptome136Y
F064854Metagenome / Metatranscriptome128Y
F075045Metagenome / Metatranscriptome119Y
F078884Metagenome116Y
F084124Metagenome112Y
F097376Metagenome / Metatranscriptome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0119878_1002986All Organisms → cellular organisms → Bacteria → Proteobacteria5429Open in IMG/M
Ga0119878_1009459All Organisms → cellular organisms → Bacteria → Proteobacteria2747Open in IMG/M
Ga0119878_1015378All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales2123Open in IMG/M
Ga0119878_1024558Not Available1660Open in IMG/M
Ga0119878_1026075All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1607Open in IMG/M
Ga0119878_1042098All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1244Open in IMG/M
Ga0119878_1049165Not Available1145Open in IMG/M
Ga0119878_1059740All Organisms → cellular organisms → Bacteria1027Open in IMG/M
Ga0119878_1060550Not Available1020Open in IMG/M
Ga0119878_1067713All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Aquisphaera → Aquisphaera giovannonii957Open in IMG/M
Ga0119878_1080634Not Available870Open in IMG/M
Ga0119878_1082007All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Pycnogonida → Pantopoda → Nymphonidae → Nymphon → Nymphon striatum862Open in IMG/M
Ga0119878_1091914All Organisms → cellular organisms → Bacteria809Open in IMG/M
Ga0119878_1095133All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium794Open in IMG/M
Ga0119878_1114627Not Available716Open in IMG/M
Ga0119878_1116860All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria708Open in IMG/M
Ga0119878_1128702All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria671Open in IMG/M
Ga0119878_1129768All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium668Open in IMG/M
Ga0119878_1143668All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquabacterium → Aquabacterium pictum632Open in IMG/M
Ga0119878_1153555All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium608Open in IMG/M
Ga0119878_1159503All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium596Open in IMG/M
Ga0119878_1178143All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Crateriforma → Crateriforma conspicua559Open in IMG/M
Ga0119878_1179146All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae557Open in IMG/M
Ga0119878_1211195Not Available505Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0119878_1002986Ga0119878_10029861F012885MPYRIRWEGHGVYRRFYGVVTRQEFRDAYEEMCGDVRYEGIRYIISDYLEALPDPDLTERDLRAQARLERLRFYDSPDTVQAMIGTDPEIVEYIRYYESLRVSPHCLGYFATVADARRWIAGNPRHGWSRPPASAASGPTAPHR*
Ga0119878_1009459Ga0119878_10094594F028103MPLSLSLPAVESRPANPPEIRLAKVSPWLDECLKREPIIAARVIGDALAATNRVAMSDSKRLDLAERYWDAAGLLWLPLERQFVRASHPLSGEALEAAKAALTLSNELAVAYKHLLASEADKRLSMGGQRLLVALVHRCLQGTTRVLVNSYLSYAPVPPRTWHDAHLIYAFARERNIHLIPVAPDQPEATPDRLTIQMLLLALANPYGFLPGQLPIVLRYVQEYAHWAKLTDIAPVHRMAKAVAIVPVGHDFPPFSANKGGSIEGSKLFLLTFDLAFQIQEQLRALEAGGDVPAG
Ga0119878_1015378Ga0119878_10153783F020930EDKFGSGGMVELDTGNARYLIRFTQTLEQQAGWSWAMFNAVRMLSG*
Ga0119878_1024558Ga0119878_10245582F097376MKKAVSPKKNKTAADGVPQEKKQTKTGPVELDLADLKKVSGGLPNGTWNRVK*
Ga0119878_1026075Ga0119878_10260752F000676RIACAVAAKVRIGLSRICFELTQKDVGDATFEVGGSEQIEVYAVADGPRTRRRIPDEHDSLAASLSSFSDPMWQVKDRSIAGLRIAASGGIGQALTLGALVAVRQSDLSDWVLGVVRRLNKVSNDEVEAGMSIIADRLVPVTLHAVRQAKDDMGFVVDGIDVSTMGARFHGLYLPPPSRPDKPLAVKTLIVPTQEYAEGRSVILTTGRSVYTVALRHLVEQRADWSWTAVQIVEKKSRV*
Ga0119878_1042098Ga0119878_10420982F021521MAGYSHRTAQPPILAVFLPWGVSAGAGRIRPASAKVRVLIF*
Ga0119878_1049165Ga0119878_10491652F025842MSIETHIPARDPRTALVREKYFSLRPKPLERWLWQQGLPQAAERVFWVHWEEGMKAGDWCSQIPLRLVASLCCVDSSTVTRAYQVLKKLDLIRREDPGRDPGNPFQQATAITEVRIPRELLTELSREPNRPQRRQDEEGGDQRHAAASTRAAPASGAVA
Ga0119878_1059740Ga0119878_10597403F050494RGRYAGRTFIPEGPLPDTEGLAELVIIPAPPRPRGSVADAFGTATVLRSGDDILAQIRAERDEWGDR*
Ga0119878_1060550Ga0119878_10605501F039794MTVHAVLPSAFLYSVGAPDIQHFAAQYPARRFPCQRFDAALASDAA*
Ga0119878_1067713Ga0119878_10677132F010528MFKRIFDEYRKAVESSFEMQRELYRQWMNGWPVKPPQGAAGPSASDVKEQIHSYQKKWSRTLAETMERHREALNEQYKSGIEAIQTAFQTTEAKTPEEYWRLTQEFWRKSIDSYKTAYESQSKYLQSLAEMWLEMVTRGKV*
Ga0119878_1080634Ga0119878_10806341F064854GTLLYAEFGALSGLDAPEARFLHSAVRDAVRMAKRNGNYSARFHNYRVGAWREPLGSRLVTVTWRVSLYDRPLFGDTEILKAPLCAAV*
Ga0119878_1082007Ga0119878_10820072F038871MFGFLTSGTKDVADPLVSAKSVAAWLRQLPPLDVIGRQQQVMRAFDAMRQSRKPVDLARVQAVEYLDAALG
Ga0119878_1091914Ga0119878_10919141F026489MRSARKVLLAEGCSLLVAKENQKTTSDFDALEPRKRGCSPLLTPKRRATPEKTEDSRLFGVKIF*
Ga0119878_1095133Ga0119878_10951331F001844GQVEALLRIDGRVEPIIAELTRQYTQNYQKSTNIESRLWHSVFDLVKAFIAAYGIALKAGYPRADNKRWRAILPWVIVRLAHYRGLDGKYRLFRYSHWIPAQWREFHELYEFARMRGWQREQLIFGVGAFAKPGVSFEQEYLKTLLLMRLDSGNFTPDQVEWVARQLEDWTPTLALTPPPSEGAPFFVDLTGTTGLRRRDRAQAGGRVMFLDAAPIYARVVERMRWLPEQDSELPKAGELPAREQRLLLMRLASLFGLDAIAQA
Ga0119878_1114627Ga0119878_11146272F075045VHFPDGTNHGTTSMMVDHHSTNVTSGRYSGSGDAGTFNMSLSPMWDRPASIGTVAGVYTRSTSNGYTMTMTMSANGQLTASDSRGCVINGSVGVPDATHNLYRIDATVTSCGSLDGTYSGMGALLDADAMQDWMTAMHPLEHGGHSHGGSMMGGSPMMGRNTVPTGQRNLFMFSLVNSQNAMMDALAR*
Ga0119878_1116860Ga0119878_11168601F054132GNRFFVHEKVYDAFAAKLAERIWQAIYDLSQGFMYSYQTALEEALRQSQNARWKPLTPLLFARLIHYYGTDAKLRVFRFERWIPAKWMDLHRTYLRASELGIERQSAVLGSAGPNATPWTVEQEFLNVLLIHQLNTGNMSPPQLDWAMSQLRAWSRRLALDAGPRTPEGFFVVLAGKTGLGRRTGQDSGSMLRYLDTTPLAESLERAISALRQAEATDQGLSTLEAVARALQAMEG
Ga0119878_1128702Ga0119878_11287021F003544AATAYKAALVVLLFDRGISGKIAGQEIRGLRAALPPDLPLVVSGRAVNLLAKPIADVHTAADFSSVMTRMRALGVLPAVPVSLVGILPDLPQRA*
Ga0119878_1129768Ga0119878_11297681F002571MKNSNSADSPGSPHSAAPKLLGFFPWQQLKSKRISYFTLPLIIMATVVEFVILATGWKYQQKVCLPQGMGVTFFGIGPIGATILAVELLKLPLAVWTA
Ga0119878_1143668Ga0119878_11436681F050165AVAGQVEHLDLVLVLTFWIVSEYRPMNPTIERALGASTPALRCLAVLDAMLVPALGLYWIKTLPATGGLVGAVLGVFCLWIGARRAYRALYEFEAYRWLTLRLAKLAIATWVVMAMVKLVWFIQGSL*
Ga0119878_1153555Ga0119878_11535551F078884VQEAWVKRLPPGELRPMQRNGKKYFIYPDASRNQVYVGGPQEYDAYVQLHPDSRKDPQDAANKSSAYRKKQDETMRKATARDLSDPFLGVTWADLGW*
Ga0119878_1159503Ga0119878_11595031F044578KAEYESAGFLLRQVLKEPVDPGVAPEREVNKLMKPTALADLDTQIKAKEAELLAVNNKRRERTAQVGEGAQKLRQEFDTRSRTKREEADRNRAELLAAYAAQEKEWKVEEKQIDTDLAGAVLNVDALRAEADAARKKAEGYYEAREAAIRHTQVHRIATTVEIVRGLILGERPMSITASAKERGDILTDQISMVRISV
Ga0119878_1178143Ga0119878_11781433F021596MHEVREFAGHADIRTTEVYFVRKEEDAEVAARRIQIRGTGRKGE*
Ga0119878_1179146Ga0119878_11791461F084124LLFGGLNKQAKAFARAIKENTLHFHSQRNALTMFLAFLFIMAVACFNKLSFSTQTAWLFAPDKLLYRKIFMGAAQTRNF*
Ga0119878_1211195Ga0119878_12111951F057612LTAQAEAQQAAAQAQWQAEAEEKTRAAVEHFKGLLARAEIERDEAKQFAAEGFRQVQNLEKKLTDASSLLAGWKNGKSAVASPGWEG*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.