NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300013942

3300013942: Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology - 150



Overview

Basic Information
IMG/M Taxon OID3300013942 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118643 | Gp0137834 | Ga0117795
Sample NameHuman gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology - 150
Sequencing StatusPermanent Draft
Sequencing CenterChalmers University of Technology
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size122511938
Sequencing Scaffolds18
Novel Protein Genes22
Associated Families22

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Podoviridae sp. ctUT631
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium4
All Organisms → cellular organisms → Bacteria → Terrabacteria group1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1
Not Available2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/741

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Gut Microbial Communities From Patients With Symptomatic Atherosclerosis - Chalmers University Of Technology
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Unclassified → Unclassified → Human Gut → Human Gut Microbial Communities From Patients With Symptomatic Atherosclerosis - Chalmers University Of Technology

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
Location
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026592Metagenome / Metatranscriptome197Y
F032286Metagenome / Metatranscriptome180Y
F032312Metagenome / Metatranscriptome180N
F042095Metagenome159N
F042936Metagenome157N
F044554Metagenome154N
F044555Metagenome / Metatranscriptome154N
F051935Metagenome143N
F057001Metagenome137Y
F058555Metagenome135N
F060985Metagenome / Metatranscriptome132N
F064817Metagenome128N
F076064Metagenome118N
F078006Metagenome117N
F080163Metagenome115N
F083451Metagenome113N
F087334Metagenome110N
F087335Metagenome110N
F089054Metagenome109N
F089590Metagenome109N
F090513Metagenome108N
F105375Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0117795_1000153All Organisms → cellular organisms → Bacteria28625Open in IMG/M
Ga0117795_1000239All Organisms → cellular organisms → Bacteria20349Open in IMG/M
Ga0117795_1001289All Organisms → cellular organisms → Bacteria5387Open in IMG/M
Ga0117795_1003014All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii3121Open in IMG/M
Ga0117795_1003121All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium3054Open in IMG/M
Ga0117795_1009035All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Podoviridae sp. ctUT631632Open in IMG/M
Ga0117795_1010740All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1474Open in IMG/M
Ga0117795_1011820All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1395Open in IMG/M
Ga0117795_1013436All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium1288Open in IMG/M
Ga0117795_1013798All Organisms → cellular organisms → Bacteria → Terrabacteria group1268Open in IMG/M
Ga0117795_1017187All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1115Open in IMG/M
Ga0117795_1017587All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1099Open in IMG/M
Ga0117795_1023997All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes917Open in IMG/M
Ga0117795_1028456All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium830Open in IMG/M
Ga0117795_1030767All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae792Open in IMG/M
Ga0117795_1037402Not Available704Open in IMG/M
Ga0117795_1050887All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74582Open in IMG/M
Ga0117795_1056611Not Available542Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0117795_1000153Ga0117795_10001534F080163MKTIKFLQESFETKERFQQEISIKYSYNLDIVESIDFRINQRNIRYFYEAMQNFENSLVNELKEKKNNFCDAKQFLESINDFDKIIFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYTHGDLSFSTKLESEVLNSEIELLQEKLNLIREEICELIGVNPNLEKQGHEDNYVFNLNIDSDNQIGFFLQATEL*
Ga0117795_1000153Ga0117795_10001536F060985MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKVIDFLRHAETNLGMCKIFDNQNHEFWHSVIKPWFKPERFGITHLWFSSGFSHIGYGEYHTIRGNRWLKTPIDKIDRENRIFGYWFPPYKKYIPHRIKVLKLALKDLERIKEEYGKD*
Ga0117795_1000153Ga0117795_10001537F032312MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMILLWPIVFIYALHDGIEGYPFKKYAIPYIFILVVWFIIFLYGLVS*
Ga0117795_1000239Ga0117795_100023928F064817MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEKILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI*
Ga0117795_1000239Ga0117795_100023930F105375MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQRLALSAMISKQDGFAIYSFLFQTPDTSNSAADAMVNFAMNFTDGEANIKSINRISSNIMQITFTV*
Ga0117795_1000239Ga0117795_100023936F044555MKTTNPSSRITLSQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYMGNLPTVPDLEKPIEIQVSTIRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR*
Ga0117795_1001289Ga0117795_100128911F089054MLTKGKFLVSFEVPGHTKEYTEGFTEEMVIPYRTEELRPYLRYPNQRINNNHLHSEFIRLRLREILQINLSDITIIDIIPLP*
Ga0117795_1003014Ga0117795_10030143F076064LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSVRRQIRLCAPDLKRRNEAKRPPKPALKFY*
Ga0117795_1003121Ga0117795_10031215F026592ASPQGIAALAAQGGVATLTERSDATFSVKQFSSADGE*
Ga0117795_1009035Ga0117795_10090351F042095RNYYTDDYNYVPDPVVGNPHNTFVEFSSRKPGMANVDWGDGIKEQFPMTKVQGEDNYRIIFRSLAIQHKKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTSFPIVDIPGLEFLVVSHTLYVNDDIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLSMFNMLDLRDIESSGIRNIKNMKNLQTLELSSCYLDRYIKEFNDLPKLTSLRIQPGPSDMWNYFDINTLPFFEVDKINPNITNFVFLKDWVSGERRTGWNDDNMSGRGLDHRTSFSVYHSNSIRVDKLPDYIYEMRSIARFEMNCSTHSQKRSDDFVNSFYDLVVGWDQITMASVAKDGERNQFYGLAVSMYESQYPDENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE*
Ga0117795_1010740Ga0117795_10107402F058555LICPVDFKPVTNKEGKKVTAIKYSLKHEEYHGSGIQISDECKMAMIYLIIINVFKHVFLRNRMHGGNRDQIEINTNDFIDILSDGCAYFCYRHVLRDSHEDMNYQLISLKAWAEGEIMIALSDIIKYKHRASKTPRIKDMFVKKGESVYTCLDKNLDSNTRRWMANKSRKLNRVKMLSKIIFSARNRNINKIYKVTKKRTVKFNVSYLMDRLNIKLSKEGMMLISQRTVYRMIKEVLSMCCKTISDLYDEVKKNNGIVNTKDRKNVTIGHLRLSYRGKIMHIIIAEDFIKDVFLGVKGSEMSKAG*
Ga0117795_1011820Ga0117795_10118203F078006MGDNILRKAADELKKTGCRVFAWQDDTYNRGWSKGDYTMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSCGSGSGCCVKEEATFDLEAALDVLNGPLPRWCRSYGVYPKQYDNIDKWYNSDNHNKKLFKEI*
Ga0117795_1013436Ga0117795_10134363F087335MLELYFNDGNFLPESREEEQSAETVLNIMLAGKTTDTEMCIWPCFYHAPMCKGVLINLDDGTTLRIEPFLNKEGEPELLIGCVTEETVGEVYQWVSNYD*
Ga0117795_1013798Ga0117795_10137982F042936MGRGGGKGRVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGTLTPPYLGKVYFRSRLRGKG*
Ga0117795_1017187Ga0117795_10171871F051935MKEEKRMKRLLGLLMAVMVMMGGISCAVAENTNPIVSDWLTELKSKRLIQIVEDEIGEGWTLYQPNGREEEENFSSAANLKEMRFLPVVAQKDNQLRLLIVRRQGDLWKVSEQNDRALMRDGWTLQNFSAMPYGNSDWTYIFFDFVDENQKRWELMLNLGDGYVSSFDAISYYVEGYGTTYINMNYDRGLEFLIDAPAYSRLSYEVYPVEDYSFGVEDFDLATCPLSMQEFLVSAIVTCGEEGAGLYIMVQQDAQPTVMLTDGDTIEAIPQKWELDWTIVYYQGNYLFMKTENCKMEE*
Ga0117795_1017587Ga0117795_10175873F083451MIMDKNEREKQVLDLLMSRKDIRKLVEKSNECYSKMDFVGAMKCRQEIKDIVDRESKIMLTKSESLIGLMNNADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMTECKKEIDYLMKGTSKSFQISFAVRSDELREMIENMVGDNIREGYDMFKEEAKMTKETDRSKIEEFNKKLDHDQM*
Ga0117795_1023997Ga0117795_10239971F032286WPPMEKWFCKVVPPVRHRALIFDVRLFTGNTDDDALVTGGTFRFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADNRTGQKTFSPFSLDLIFTFDFAALSECRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENALKNADFHAHGQDRERAEI*
Ga0117795_1028456Ga0117795_10284561F057001MPIQAPRVRANLMTNKELNKVQNEVKKSNEKTLTGAVKTWCNLFKSGKEINDILKENDIKVSREVVPALVALAKDKEVVIQLCKEILPRVNNTFCAYKEVEREYYDKNDQDKNKKLKMNEIEDIAILGSSHKRFGYNEPIEFDFGIYYETFNGADKRIIKCAVPIKRYTFNLIAKCVTYYLTHPKNDR*
Ga0117795_1030767Ga0117795_10307671F090513MLKIFAMAKYVRKMEWKLLHIKHILYMQPFGALKIVPQSVGNKNGTKAVLQGWAAAFVPYMLSFTY*
Ga0117795_1037402Ga0117795_10374021F089590MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWFREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFADAYLVKVFKAVFKRINVFKMFSFSKNIPDETFDDIKKIADDEVKDKS*
Ga0117795_1050887Ga0117795_10508872F087334MASRYPFVGAAAHLFPTNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLCRTASLFEYREKHP*
Ga0117795_1056611Ga0117795_10566111F044554FIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL*
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Biomedical Sciences Research Center "Alexander Fleming"
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