Sample 3300013883

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300013883

3300013883: laboratory microbial enrichments from Reconcavo Basin petroleum reservoir, Newcastle Upon Tyne, UK - 15 gl 40C L2 15gl 40C L2

Overview

Basic Information
IMG/M Taxon OID	3300013883 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128767 \| Gp0208154 \| Ga0181297
Sample Name	laboratory microbial enrichments from Reconcavo Basin petroleum reservoir, Newcastle Upon Tyne, UK - 15 gl 40C L2 15gl 40C L2
Sequencing Status	Permanent Draft
Sequencing Center	UNIVERSIDADE DE SAO PAULO
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	41316940
Sequencing Scaffolds	5
Novel Protein Genes	5
Associated Families	5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Microbial Communities From Methanogenic Microcosms From Oil Petroleum Samples
Type	Engineered
Taxonomy	Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Laboratory Microcosms → Microbial Communities From Methanogenic Microcosms From Oil Petroleum Samples

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline)

Location Information
Location	Newcastle Upon Tyne, United Kingdom
Coordinates	Lat. (^o)	54.97825278	Long. (^o)	-1.61778056	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F033819	Metagenome / Metatranscriptome	176	Y
F058560	Metagenome / Metatranscriptome	135	Y
F066219	Metagenome / Metatranscriptome	127	Y
F077010	Metagenome / Metatranscriptome	117	N
F089495	Metagenome / Metatranscriptome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0181297_100072	All Organisms → cellular organisms → Bacteria	36273	Open in IMG/M
Ga0181297_100973	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	5923	Open in IMG/M
Ga0181297_101162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	5179	Open in IMG/M
Ga0181297_103268	All Organisms → cellular organisms → Bacteria	2278	Open in IMG/M
Ga0181297_104272	All Organisms → cellular organisms → Bacteria	1791	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0181297_100072	Ga0181297_10007237	F089495	MGRPYLRKKHVTISLFDGTPITPFTETITGYADVPELLEPVIDAPAEGYAPQGVFNSIEEGDDTINLPEFSITVDINDDDVATNKYALNEWFNNHKESNGATALVSTNDGSAYLKKSIDGSTVSANLATDWFTIGMKILFDNSGTAKAFGKQYKYVRPISATFSTSNKAQVTLRMQIVGAPTDITS*
Ga0181297_100973	Ga0181297_10097314	F058560	MGKLYVKCPKCGRLTNNVELIYPRTDEYEEKRVKAFICPHCLYVFNEPDDEKTNNKQGDEK*
Ga0181297_101162	Ga0181297_1011628	F077010	MDNLLANGKPHFVYIDEGTKRMWWIMPDMETVRMFKTGKENWIEIPPEDWKMADIEFASQLPDLFLEDK*
Ga0181297_103268	Ga0181297_1032681	F066219	MKKMLVIVLVIAVTSLSFANLVEFFDSIPPALKFGTGAVIGIYGLSWAYPWFFDPIVIVGDTEFGAFCFGPFIVISPYLWNEASEDSRNIVLNHEYVHYIQHAIYGPILSLSYPILAAYSTLKTGNQWDANLWELQAIELSDSSK
Ga0181297_104272	Ga0181297_1042723	F033819	MDASDSKQSRVTNTAIQSQLIELSVRLARMEKDIQEIKNNLSESGDKVISLEKSEAGRYPLIDRRLDNLEKRTDKHEDEIDQLVKITQSLANTNKVLTWVAGLAGAGVLSWLIAQILSLIG*

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