Sample 3300013865

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Sample 3300013865

3300013865: Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In5p-11 gowning area SPAdes reassembly

Overview

Basic Information
IMG/M Taxon OID	3300013865 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095512 \| Gp0115407 \| Ga0181471
Sample Name	Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In5p-11 gowning area SPAdes reassembly
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	42842632
Sequencing Scaffolds	24
Novel Protein Genes	26
Associated Families	18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	12
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → lamiids → Lamiales → Oleaceae → Oleeae → Olea → Olea europaea → Olea europaea subsp. europaea	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	1
All Organisms → cellular organisms → Eukaryota	2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus → Candidatus Nitrosocosmicus oleophilus	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus → Staphylococcus aureus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa
Type	Engineered
Taxonomy	Engineered → Built Environment → Unclassified → Unclassified → Unclassified → Clean Room → Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Surface (non-saline)

Location Information
Location	USA: Jet Propulsion Laboratory, Pasadena, California
Coordinates	Lat. (^o)	34.1	Long. (^o)	-118.1	Alt. (m)	N/A	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009385	Metagenome / Metatranscriptome	318	Y
F009488	Metagenome	317	Y
F011735	Metagenome / Metatranscriptome	287	Y
F013050	Metagenome / Metatranscriptome	275	Y
F017428	Metagenome	240	Y
F028713	Metagenome / Metatranscriptome	190	Y
F033186	Metagenome	178	Y
F033665	Metagenome / Metatranscriptome	176	Y
F034461	Metagenome / Metatranscriptome	174	Y
F038985	Metagenome / Metatranscriptome	164	Y
F044253	Metagenome	154	Y
F048823	Metagenome / Metatranscriptome	147	Y
F057039	Metagenome / Metatranscriptome	136	Y
F061214	Metagenome / Metatranscriptome	132	Y
F078089	Metagenome	116	Y
F078199	Metagenome / Metatranscriptome	116	Y
F093243	Metagenome / Metatranscriptome	106	Y
F100750	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0181471_100072	Not Available	24877	Open in IMG/M
Ga0181471_100077	Not Available	24428	Open in IMG/M
Ga0181471_100113	Not Available	22231	Open in IMG/M
Ga0181471_100138	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	20906	Open in IMG/M
Ga0181471_100186	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	18833	Open in IMG/M
Ga0181471_100339	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → lamiids → Lamiales → Oleaceae → Oleeae → Olea → Olea europaea → Olea europaea subsp. europaea	15476	Open in IMG/M
Ga0181471_100377	All Organisms → cellular organisms → Bacteria	14680	Open in IMG/M
Ga0181471_100407	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	14018	Open in IMG/M
Ga0181471_100422	All Organisms → cellular organisms → Eukaryota	13768	Open in IMG/M
Ga0181471_100515	Not Available	12057	Open in IMG/M
Ga0181471_100521	All Organisms → cellular organisms → Eukaryota	11917	Open in IMG/M
Ga0181471_100526	Not Available	11866	Open in IMG/M
Ga0181471_100618	Not Available	10653	Open in IMG/M
Ga0181471_100869	All Organisms → cellular organisms → Bacteria	8360	Open in IMG/M
Ga0181471_101257	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus → Candidatus Nitrosocosmicus oleophilus	5792	Open in IMG/M
Ga0181471_102206	Not Available	3270	Open in IMG/M
Ga0181471_102438	All Organisms → cellular organisms → Eukaryota → Opisthokonta	2934	Open in IMG/M
Ga0181471_102685	Not Available	2649	Open in IMG/M
Ga0181471_103121	Not Available	2247	Open in IMG/M
Ga0181471_104075	Not Available	1701	Open in IMG/M
Ga0181471_108701	All Organisms → cellular organisms → Bacteria	830	Open in IMG/M
Ga0181471_112759	Not Available	597	Open in IMG/M
Ga0181471_114075	Not Available	549	Open in IMG/M
Ga0181471_115187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus → Staphylococcus aureus	516	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0181471_100072	Ga0181471_1000722	F017428	MTMDIEGVSTHMDFEVIEIFDDNNPCSMLLGIEWATDMNGVINLKRQKMIFEKKSLCVIVPLDPVEGSHYIEPVQDEDNDDELD*
Ga0181471_100077	Ga0181471_1000778	F078199	MLGYDFEIIYKEGEKIFVADSLSRKYEDVEAFLCAISIIQLRLDN*
Ga0181471_100113	Ga0181471_10011317	F011735	MWYGPFIVKCVLKKGAYELIDFEGNKLAELRNGLYLKKYIS*
Ga0181471_100138	Ga0181471_1001383	F078089	MGLPEGQVIEQAYVILLKLDKNKEVLVSNDWGKIGRNSRKL*
Ga0181471_100186	Ga0181471_10018612	F033186	MKINNKIPWGLATGTLGVTAAGMFDGIAILGMASIIGGALALVTALLAKQQIEKKKLKPELMLELR*
Ga0181471_100339	Ga0181471_1003398	F078089	LHEGKIIEQAYVILLKLDKNKEVLVGNDWGKIGKLEELHW*
Ga0181471_100377	Ga0181471_1003777	F100750	MAEHIEDFQKLSIRENDIPKKQRIDFYIGTLKDNIQHEVHQWEPDSLEKEFRLARKVERKIMETRNSTPHNYKN*
Ga0181471_100407	Ga0181471_10040719	F034461	MLGYDFEIIYKKGKQNVGADALSRKDEDVEALLCAISIILPDWINEARDEWNNDKEVWELIQKL*
Ga0181471_100422	Ga0181471_10042217	F044253	MLLDYIPTEEKDVDILTKAFSRCKFEFNRDMIGVVDNPLLVEREYLF*
Ga0181471_100515	Ga0181471_1005153	F033665	MKIGGEAKAHEISKTQKWIGQILPGLGDIKIINIFNGVPKSKLRKNKILMGIKIKLG*
Ga0181471_100521	Ga0181471_10052113	F100750	MEHIEEFQKLNIRVKNIPEEHRIDVFIGTLKDNIRHDVHLWELDSLEKEIRLARKMERKIMATRKHTSHNYKGGSVVTPSLPQPIRLTPQ*
Ga0181471_100521	Ga0181471_1005213	F028713	MIEEKKVLVVKVDTLKNTTYALTKFVSYEKFSWCRETMGISGLVK*
Ga0181471_100521	Ga0181471_1005218	F034461	MTSKSSTKKGSKNVVADALSRKDEDVEALLCVISIIQPNWIDEAREEWKNDEEVWVVIRK
Ga0181471_100526	Ga0181471_1005268	F093243	MLLSYIPMEDQDADILTKALTRSKFEYHKGKLGVANNPYLVEREC*
Ga0181471_100618	Ga0181471_10061810	F093243	MLLSYIPTKDQNADILTKALTRRKFEYHRGRIGVADNPYFVEREC*
Ga0181471_100869	Ga0181471_1008698	F009385	MFILRDKSQLEKAIAKAKKIRPRVEFDHFGRYRVSGSKGYYTVICRKDERGYKTVACTCKGAEKGLVCYHSAAALSLHIGLAKQRQEA*
Ga0181471_101257	Ga0181471_1012578	F009488	MLLSSTNKKITIKKALKWIFSGFSISFVAILFFMTVHDTMTGQSSNTAESCAKYGFLASPEC*
Ga0181471_102206	Ga0181471_1022064	F028713	MVEDKKVLMVKVETLKNVADALMKSVTTKKFSWCREIMVVIGMDQ*
Ga0181471_102438	Ga0181471_1024382	F061214	MSALCRLVNGFAKLTNTGLALKETPINGGLTYEGPKVAEFLGR*
Ga0181471_102685	Ga0181471_1026851	F013050	MSKGKQPRTRANKVPKLLLSEIKEVIIQYVQGIGLEAAIF*
Ga0181471_103121	Ga0181471_1031215	F048823	MPNLDRWVNQNNNKDYEDMTIETINKFETHLLSIRDQRQEMIHHLSHPTYNEHQQKIIEMIDWALEKYKVAIDTQKMNEQAIIDNIIEELDNKRNVAINKKKRAILKDETWEYSEXXXXRRRYY*
Ga0181471_104075	Ga0181471_1040752	F057039	MVVHVVEWECIFEMDMNGVVVVMEVNGRENMELGMDDIEENIEDIVDGSHKFLANLVDNSGFGLEMVNVAKENVCSNDLSWIHEE*
Ga0181471_108701	Ga0181471_1087011	F028713	MVEDKKVLIVKVDTLKNIADALTKRVRTEKFSWCRETMGVARLDQ*
Ga0181471_112759	Ga0181471_1127591	F028713	MVEDKKMLVVRLDTLKNTIDALKNSMSTEEFSWCRETMGVAGLDQ*
Ga0181471_114075	Ga0181471_1140751	F038985	HLPKKRRLRPQNCSPSLGPKNPPKIVNCATIKEIEKLKEAMVVVQVE*
Ga0181471_115187	Ga0181471_1151871	F078199	MLGYDFEIIYKKGKQNVIADALSRKDEEVEAFLCAISIIKPYWII

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.