| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300013762 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0118446 | Gp0134499 | Ga0116693 |
| Sample Name | Beach sand microbial communities from Municipal Pensacola Beach, Florida - OS-J598 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Georgia Institute of Technology |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 226239734 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | 1 |
| Not Available | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Beach Sand Microbial Communities From Municipal Pensacola Beach, Florida |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Sand → Unclassified → Beach Sand → Beach Sand Microbial Communities From Municipal Pensacola Beach, Florida |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → beach → beach sand |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Municipal Pensacola Beach, FL | |||||||
| Coordinates | Lat. (o) | 30.3262 | Long. (o) | -87.1745 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001186 | Metagenome / Metatranscriptome | 754 | Y |
| F001506 | Metagenome / Metatranscriptome | 681 | Y |
| F010714 | Metagenome / Metatranscriptome | 300 | Y |
| F046726 | Metagenome / Metatranscriptome | 151 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0116693_1000053 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | 4735 | Open in IMG/M |
| Ga0116693_1019796 | Not Available | 657 | Open in IMG/M |
| Ga0116693_1031803 | Not Available | 584 | Open in IMG/M |
| Ga0116693_1041694 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 547 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0116693_1000053 | Ga0116693_10000533 | F001506 | MNRILYENRCRCNEEFSITKKRKSPTRSEGKPLQYPKSDEIISKTFQIKYPNKLSLTAKFILNSFQNKYIYYAIDDILDTRTERENLLAILYSPLLSLQNNFSVNFFDIWIREVYIEEVAKTNRFLSKNSQTLDQFSYITIQFFYKTKVPVRKQESLW* |
| Ga0116693_1019796 | Ga0116693_10197962 | F046726 | LGRISEQEKIEIIQRGFQLQAEGKISLKKYYESTDPNSLVQSKGYSIKYESIRRTKLYQQLKPSNN* |
| Ga0116693_1031803 | Ga0116693_10318032 | F010714 | MRVKLQLVISHDDGHEETITDVITLNKNHKRIEHLGLSLAESKQLLSTVSPGSSGR* |
| Ga0116693_1041694 | Ga0116693_10416941 | F001186 | MTQQDSWTTRLKNYIADVLPWTHGHQLKGITTFVGAILEKQTGNQAELARGQGNQEAAVKRLSRLLHNARLGPHRLADSVLAQALEQLPAKGTVRLAIDWTIEAPHHLLVVSLLTGGRAVPIYWRADDAGGVEGGLRRSEEGGMTAVS |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |