| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300013759 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0118601 | Gp0137336 | Ga0119972 |
| Sample Name | Intertidal thrombolitic mat microbial community from Highborne Cay, Bahamas - Thr-A |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of Florida |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 265928561 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 4 |
| Associated Families | 3 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 2 |
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus cobalaminigenes | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Intertidal Thrombolitic Mat Microbial Community From Highborne Cay, Bahamas |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Intertidal Zone → Microbialites → Intertidal Thrombolitic Mat → Intertidal Thrombolitic Mat Microbial Community From Highborne Cay, Bahamas |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Surface (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Bahamas: Highborne Cay | |||||||
| Coordinates | Lat. (o) | 24.43 | Long. (o) | -76.49 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001506 | Metagenome / Metatranscriptome | 681 | Y |
| F065810 | Metagenome / Metatranscriptome | 127 | Y |
| F087322 | Metagenome | 110 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0119972_1004056 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | 2742 | Open in IMG/M |
| Ga0119972_1088821 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 536 | Open in IMG/M |
| Ga0119972_1097565 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus cobalaminigenes | 513 | Open in IMG/M |
| Ga0119972_1101502 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 504 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0119972_1004056 | Ga0119972_10040563 | F001506 | MNRILYFFSSRCKEKEEFSITKKRKSTNRSEGKPLKYPSPNDIKVKTFQIKYEKKLSSIAKLTLNSFRNKYLYYAIDDILYLFKSNPIERDNLLAVLYSPVLSLHNNFSINFFDIWIHEIYINEISKVNKFLTTDFQNLEQCSYITIKFLYQTRLPGKKQESLW* |
| Ga0119972_1088821 | Ga0119972_10888211 | F065810 | ITKKQTKKKRKEGRSIKYPSIEKRISKTFQIRYDKTLSLTAKFILNSFQNKYFYYAIDDILYLLKFDPIERDSLLTVLYSPVISLQNNFSINFFDIWIEQIYINEIEKVNKFLTNDSQNFEHFSYITLTLIYKTSEPVQKLEALW* |
| Ga0119972_1097565 | Ga0119972_10975651 | F087322 | SCDIYPTSTSVDLQALRFGFVLTLLLVFKMIQAGTGEACFVFFNRRIFLGDDLRAAIDFQA* |
| Ga0119972_1101502 | Ga0119972_11015021 | F001506 | MNQILFENRYKSNEEISVIKKRKSTSRSEGKPLQYPKSTEIKWKRFQIKYDGKLSLIAKFILNSFQNKYIYYGIDDILYQFGLDSNEYETLLAILYSPVISLQNNYSVNFFDIWLSEIYIEEESQQINFFPIQGRKSMQLQCSFKVRRKK* |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |