NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300013414

3300013414: Rat cecal microbial community from a salt sensitive rat, Toledo, Ohio, USA - rat 1



Overview

Basic Information
IMG/M Taxon OID3300013414 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0128738 | Gp0206497 | Ga0177923
Sample NameRat cecal microbial community from a salt sensitive rat, Toledo, Ohio, USA - rat 1
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of California, Davis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size496969192
Sequencing Scaffolds1
Novel Protein Genes1
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameRat Cecal Microbial Communities From Salt Sensitive Rats, Toledo, Ohio, Usa
TypeHost-Associated
TaxonomyHost-Associated → Mammals → Digestive System → Large Intestine → Cecum → Rat Cecum → Rat Cecal Microbial Communities From Salt Sensitive Rats, Toledo, Ohio, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal proximal gut

Location Information
LocationToledo, Ohio, USA
CoordinatesLat. (o)41.6639Long. (o)-83.5552Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077438Metagenome / Metatranscriptome117Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0177923_1143917All Organisms → cellular organisms → Bacteria696Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0177923_1143917Ga0177923_11439171F077438SLCCVYSTHRVERPFAQRRFETLFLWSLKVEISSDLMPTVEKEISSNKN*

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