Sample 3300013293

Overview

Basic Information
IMG/M Taxon OID	3300013293 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0118444 \| Gp0134408 \| Ga0120688
Sample Name	Aquatic prokaryotic and eukaryotic communities from a canal in New York, USA: aquatic canal water -GCSS-13
Sequencing Status	Permanent Draft
Sequencing Center	Weill Cornell Medical College
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	101482816
Sequencing Scaffolds	13
Novel Protein Genes	14
Associated Families	13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobulbaceae → Candidatus Electrothrix → Candidatus Electrothrix marina	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Urban Prokaryotic And Eukaryotic Communities From The Subway And Surrounding Areas In New York, Usa
Type	Engineered
Taxonomy	Engineered → Built Environment → Canal → Unclassified → Unclassified → Aquatic Canal → Urban Prokaryotic And Eukaryotic Communities From The Subway And Surrounding Areas In New York, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA:New York City
Coordinates	Lat. (^o)	40.67	Long. (^o)	-73.99	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F004928	Metagenome / Metatranscriptome	418	Y
F005564	Metagenome / Metatranscriptome	396	Y
F016971	Metagenome / Metatranscriptome	243	Y
F021019	Metagenome / Metatranscriptome	221	Y
F021441	Metagenome / Metatranscriptome	219	Y
F036294	Metagenome / Metatranscriptome	170	Y
F048675	Metagenome	148	Y
F056961	Metagenome	137	N
F072362	Metagenome / Metatranscriptome	121	Y
F077315	Metagenome / Metatranscriptome	117	Y
F080659	Metagenome	115	Y
F088437	Metagenome	109	Y
F094059	Metagenome / Metatranscriptome	106	Y

Family

Category

Number of Sequences

3D Structure?

F004928

Metagenome / Metatranscriptome

418

F005564

Metagenome / Metatranscriptome

396

F016971

Metagenome / Metatranscriptome

243

F021019

Metagenome / Metatranscriptome

221

F021441

Metagenome / Metatranscriptome

219

F036294

Metagenome / Metatranscriptome

170

F048675

Metagenome

148

F056961

Metagenome

137

F072362

Metagenome / Metatranscriptome

121

F077315

Metagenome / Metatranscriptome

117

F080659

Metagenome

115

F088437

Metagenome

109

F094059

Metagenome / Metatranscriptome

106

Scaffold	Taxonomy	Length	IMG/M Link
Ga0120688_1000994	Not Available	1560	Open in IMG/M
Ga0120688_1003018	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	1121	Open in IMG/M
Ga0120688_1005982	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	888	Open in IMG/M
Ga0120688_1007055	Not Available	838	Open in IMG/M
Ga0120688_1008588	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobulbaceae → Candidatus Electrothrix → Candidatus Electrothrix marina	783	Open in IMG/M
Ga0120688_1011679	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
Ga0120688_1012163	Not Available	695	Open in IMG/M
Ga0120688_1016729	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium	624	Open in IMG/M
Ga0120688_1022448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	567	Open in IMG/M
Ga0120688_1027140	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	534	Open in IMG/M
Ga0120688_1028642	Not Available	525	Open in IMG/M
Ga0120688_1030664	All Organisms → cellular organisms → Bacteria → Proteobacteria	514	Open in IMG/M
Ga0120688_1032186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	506	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0120688_1000994

Not Available

1560

Open in IMG/M

Ga0120688_1003018

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales

1121

Open in IMG/M

Ga0120688_1005982

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi

888

Open in IMG/M

Ga0120688_1007055

Not Available

838

Open in IMG/M

Ga0120688_1008588

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobulbaceae → Candidatus Electrothrix → Candidatus Electrothrix marina

783

Open in IMG/M

Ga0120688_1011679

All Organisms → cellular organisms → Bacteria

705

Open in IMG/M

Ga0120688_1012163

Not Available

695

Open in IMG/M

Ga0120688_1016729

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium

624

Open in IMG/M

Ga0120688_1022448

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium

567

Open in IMG/M

Ga0120688_1027140

All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium

534

Open in IMG/M

Ga0120688_1028642

Not Available

525

Open in IMG/M

Ga0120688_1030664

All Organisms → cellular organisms → Bacteria → Proteobacteria

514

Open in IMG/M

Ga0120688_1032186

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium

506

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0120688_1000994	Ga0120688_10009942	F077315	MLICKASTLFLSRFACWKVWALLLLLVLLVPAQAEEASKPDVLPQAQATLERLEQQLANARTATAQELKKLKKEIDTVRSSAKDCVQQAEPKIEILDSELAIFQPEAPKDTQKKTVEETQPAAEPEAPFSPAIARQLQDLQSRKASLEGRMAICKLMLLRSNELESDVDDYLSSLQTRQLLARGPTLVGVVQAN
Ga0120688_1003018	Ga0120688_10030182	F056961	MNVEHRTLNFEHRIMYSTIYNKDKAKRLPHSTFDVERSMFDVQIVASEITTKPSYHVKIMYTDQEF*
Ga0120688_1005982	Ga0120688_10059821	F088437	FITEDSYRMAGVSQGLGIDTQQSGTWIALEQSQAIQPRALWALVQWFGQLSPAQLNLALGVEPPQYILEDEKHVKECGQRAYMPMVYTPKDALLWWVDYLHSASEDALTTSLARFKALSERLEHIVGATVDGWEGAQNALRTVFPGIAIEECHFHALLNLGKHLATYKRQRKRAGNPVLPTEEAAIRNAFLNVLKAKTQKAYQDALDELPTAFNHPTLASRKQSLTEKQALFQAWTTDAKLAVVSTPLDQCMKFLKRKFQNMQTFHGDKSGLATVNAWAITRNCWRFLKGAIRAG
Ga0120688_1006074	Ga0120688_10060741	F021019	MTEHKYIVKIFTKYLQTSFEIESEKEINNMEELNKPIIDFLGKSDIKWEKNDLQYHGTGNDFYITYEEVNNGSAKDGVVREENTVRV*
Ga0120688_1007055	Ga0120688_10070552	F021441	VGTKKIMKKIKHNDLVPWFIQDHGTLPASYLKSCRSFFDSIKLQASSIKPQASIQKNLHKPGTRVKNRFNRKI*
Ga0120688_1008588	Ga0120688_10085881	F036294	MDRGSSDEAIVGVKPVADEDAVTYLRVKLSESGSDAGAEGRNM*
Ga0120688_1011679	Ga0120688_10116791	F056961	CILPFYNKDEAKRLPHSTFDVERSMFDVQIVASEITTKPPYHIEIMYTGQEF*
Ga0120688_1012163	Ga0120688_10121631	F005564	MKPSKQQVVTGTDMHKIIIGLLVIYFLGDPGMETIAWLGSMKNYVITAVIALATAPFIVS
Ga0120688_1016729	Ga0120688_10167291	F080659	MTGIPILDTILDLIMQYRLGIAMMGLAVIAIGLLARPIAPEWSAHNRSAVAMMVIGGIILVLLPTLAAAIVGP*
Ga0120688_1022448	Ga0120688_10224481	F004928	MAQALHSVETQPDHTVEIIVHVTENLGEKKRNELVAALEEDSGITTAEFCPLRYHLILVRYDRDTYSSQDVLNRVKAQNLDARLIGPV*
Ga0120688_1027140	Ga0120688_10271401	F094059	FLDSFMYPQSFISLCGYFRDLPVGHYTARFLGVFIGAILGVLFVMFIGVLYKWVLKDWAYSKATRLGALAFILIALMTGFMSDMFNESIGMALHIEEGMPEDLVGKFLVEDYGSFEKGTKITVQNASILGAYGTVKGNNQAGARRWWISSLIFMYAWFGLYFLCAHRLFKRNKVPRKD
Ga0120688_1028642	Ga0120688_10286421	F072362	MHKLFAIGVLIYLVGDPGLSMLASFSEARELIVASALALIAVPWVVSQIDN*
Ga0120688_1030664	Ga0120688_10306641	F048675	MEEHMDSNEVLFCEHYAAAQSLKSFWTQLASTYGCMMIVLTPNMLIIKPHWFAKWLLSLLRLDLCHEIPITRIRGVIEKGKWSSYGKVELHFQTVEGKDQNILLYLKKYHDFVDKIKGSIHR*
Ga0120688_1032186	Ga0120688_10321861	F016971	KFAHGDSTMDNAVQQSFIETKNAVEVVVYIKEDLGAEQRDLVVSALEKTDGIIGAEFCQLRNHLLLAKYDRDIFSSQDVLKSFNSLKLDARLIGPI*

Scaffold ID

Protein ID

Family

Sequence

Ga0120688_1000994

Ga0120688_10009942

F077315

MLICKASTLFLSRFACWKVWALLLLLVLLVPAQAEEASKPDVLPQAQATLERLEQQLANARTATAQELKKLKKEIDTVRSSAKDCVQQAEPKIEILDSELAIFQPEAPKDTQKKTVEETQPAAEPEAPFSPAIARQLQDLQSRKASLEGRMAICKLMLLRSNELESDVDDYLSSLQTRQLLARGPTLVGVVQAN

Ga0120688_1003018

Ga0120688_10030182

F056961

MNVEHRTLNFEHRIMYSTIYNKDKAKRLPHSTFDVERSMFDVQIVASEITTKPSYHVKIMYTDQEF*

Ga0120688_1005982

Ga0120688_10059821

F088437

FITEDSYRMAGVSQGLGIDTQQSGTWIALEQSQAIQPRALWALVQWFGQLSPAQLNLALGVEPPQYILEDEKHVKECGQRAYMPMVYTPKDALLWWVDYLHSASEDALTTSLARFKALSERLEHIVGATVDGWEGAQNALRTVFPGIAIEECHFHALLNLGKHLATYKRQRKRAGNPVLPTEEAAIRNAFLNVLKAKTQKAYQDALDELPTAFNHPTLASRKQSLTEKQALFQAWTTDAKLAVVSTPLDQCMKFLKRKFQNMQTFHGDKSGLATVNAWAITRNCWRFLKGAIRAG

Ga0120688_1006074

Ga0120688_10060741

F021019

MTEHKYIVKIFTKYLQTSFEIESEKEINNMEELNKPIIDFLGKSDIKWEKNDLQYHGTGNDFYITYEEVNNGSAKDGVVREENTVRV*

Ga0120688_1007055

Ga0120688_10070552

F021441

VGTKKIMKKIKHNDLVPWFIQDHGTLPASYLKSCRSFFDSIKLQASSIKPQASIQKNLHKPGTRVKNRFNRKI*

Ga0120688_1008588

Ga0120688_10085881

F036294

MDRGSSDEAIVGVKPVADEDAVTYLRVKLSESGSDAGAEGRNM*

Ga0120688_1011679

Ga0120688_10116791

F056961

CILPFYNKDEAKRLPHSTFDVERSMFDVQIVASEITTKPPYHIEIMYTGQEF*

Ga0120688_1012163

Ga0120688_10121631

F005564

MKPSKQQVVTGTDMHKIIIGLLVIYFLGDPGMETIAWLGSMKNYVITAVIALATAPFIVS

Ga0120688_1016729

Ga0120688_10167291

F080659

MTGIPILDTILDLIMQYRLGIAMMGLAVIAIGLLARPIAPEWSAHNRSAVAMMVIGGIILVLLPTLAAAIVGP*

Ga0120688_1022448

Ga0120688_10224481

F004928

MAQALHSVETQPDHTVEIIVHVTENLGEKKRNELVAALEEDSGITTAEFCPLRYHLILVRYDRDTYSSQDVLNRVKAQNLDARLIGPV*

Ga0120688_1027140

Ga0120688_10271401

F094059

FLDSFMYPQSFISLCGYFRDLPVGHYTARFLGVFIGAILGVLFVMFIGVLYKWVLKDWAYSKATRLGALAFILIALMTGFMSDMFNESIGMALHIEEGMPEDLVGKFLVEDYGSFEKGTKITVQNASILGAYGTVKGNNQAGARRWWISSLIFMYAWFGLYFLCAHRLFKRNKVPRKD

Ga0120688_1028642

Ga0120688_10286421

F072362

MHKLFAIGVLIYLVGDPGLSMLASFSEARELIVASALALIAVPWVVSQIDN*

Ga0120688_1030664

Ga0120688_10306641

F048675

MEEHMDSNEVLFCEHYAAAQSLKSFWTQLASTYGCMMIVLTPNMLIIKPHWFAKWLLSLLRLDLCHEIPITRIRGVIEKGKWSSYGKVELHFQTVEGKDQNILLYLKKYHDFVDKIKGSIHR*

Ga0120688_1032186

Ga0120688_10321861

F016971

KFAHGDSTMDNAVQQSFIETKNAVEVVVYIKEDLGAEQRDLVVSALEKTDGIIGAEFCQLRNHLLLAKYDRDIFSSQDVLKSFNSLKLDARLIGPI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300013293: Aquatic prokaryotic and eukaryotic communities from a canal in New York, USA: aquatic canal water -GCSS-13

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences