| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300013106 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0118094 | Gp0172361 | Ga0150957 |
| Sample Name | Marine water column microbial functions of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 2.7-0.2um, replicate b |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Georgia Genomics Facility |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 34375628 |
| Sequencing Scaffolds | 10 |
| Novel Protein Genes | 10 |
| Associated Families | 9 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 6 |
| All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED161 | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203 | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → coastal water body → coastal sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Cariaco Basin, Venezuela | |||||||
| Coordinates | Lat. (o) | 10.5 | Long. (o) | -64.66 | Alt. (m) | N/A | Depth (m) | 267 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005911 | Metagenome / Metatranscriptome | 386 | Y |
| F026894 | Metagenome / Metatranscriptome | 196 | N |
| F036277 | Metagenome / Metatranscriptome | 170 | Y |
| F054846 | Metagenome / Metatranscriptome | 139 | N |
| F060454 | Metagenome / Metatranscriptome | 133 | Y |
| F065855 | Metagenome / Metatranscriptome | 127 | N |
| F067833 | Metagenome / Metatranscriptome | 125 | Y |
| F076161 | Metagenome / Metatranscriptome | 118 | N |
| F082613 | Metagenome / Metatranscriptome | 113 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0150957_1022104 | Not Available | 714 | Open in IMG/M |
| Ga0150957_1022105 | Not Available | 714 | Open in IMG/M |
| Ga0150957_1023118 | Not Available | 796 | Open in IMG/M |
| Ga0150957_1029406 | Not Available | 594 | Open in IMG/M |
| Ga0150957_1031197 | All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED161 | 536 | Open in IMG/M |
| Ga0150957_1035290 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 593 | Open in IMG/M |
| Ga0150957_1041980 | Not Available | 930 | Open in IMG/M |
| Ga0150957_1044113 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203 | 678 | Open in IMG/M |
| Ga0150957_1097340 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1 | 546 | Open in IMG/M |
| Ga0150957_1099127 | Not Available | 615 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0150957_1022104 | Ga0150957_10221041 | F082613 | GPNATTKDAGIYATKIISVTTSASASNILIGHTNVGFAPWKVIPSRGVSSTTGASIGIDGTANITLQTTFANIADNAIFAGTFDVFSHSFLAALTASAFDTVDTREIGVRLKFNSWSSGNVRLDLSVSAKG* |
| Ga0150957_1022105 | Ga0150957_10221051 | F082613 | GPNATTKDAGIYATKIISVTTSASASNILIGHTNVGFAPWKVIPSRGVSSTTGASIGIDGTANITLQTTFANIADNAIFAGTFDVFSHSYLAALTASAFDTVDTREIGVRLKFNSWSSGNVRLDLSVSAKG* |
| Ga0150957_1023118 | Ga0150957_10231181 | F005911 | MNLKRRLLKLLKSKKGNALLLATAGAIAATFSVYFFVSLTTLSEDSKQRVAHLYNAYQMGQSLKGKIDGADINQARLGTAAEDDIEAPIDDVFHNGKFITLKVMVKKAIIIAADDPTATARAGTDTSYDLEKSGVLIKYADAGGAVITATNTGDGTDTIVADVQLFVNLAGTPDTASNSPYTDGEPFYYILMDEVSASLAASDITVDLTQFPAGILATNDGGPQAEVSVILPQDDE* |
| Ga0150957_1029406 | Ga0150957_10294061 | F036277 | LCSNPFVDKSTQYELHSPNKNKFDLVYLGSASLNN* |
| Ga0150957_1031197 | Ga0150957_10311971 | F067833 | VKIKDYGIVAMANVFQHLMYVTAQVSSVMQAGVLTVLMVQMK |
| Ga0150957_1035290 | Ga0150957_10352902 | F060454 | TDGWLSLIEELKLLEERTNKLDSIENEKDLWFARGQLSVLRQLLYLEEATHRAMEELGI* |
| Ga0150957_1041980 | Ga0150957_10419801 | F054846 | MSNELNLNDLGLGDNSQSAINDKLPRRGAEGRGQGRESRKSLSEHDTARKPERVPMYAQRTMIDTTLIPEGYHGHWVSNNPAGRIDMLLRAGYDFVTKDQNVYSSHVTENGVDSRVSKSGSDGVTLYLMIIPLELYEADQEAKAEKAKEQTATIFGKQRNDHDFFSRDENGRDTPASRGIGRVTTNDFVL* |
| Ga0150957_1044113 | Ga0150957_10441132 | F026894 | SKSNQNVVQKTNRVQSPVAGVSRKKGTSSNRVKLTSDDLTTAKNFGININDEAALKRFAKEVKDYSDQNTGT* |
| Ga0150957_1097340 | Ga0150957_10973401 | F076161 | LFFKMRRQVHWTRGPSNVPRRIRLTPRNRRAEAHRFKKSINFASRCPKTDFRAFAENPVAKSLLLPQFGGQKVPPQGASIPNRLTAWTVPQIAADPKERNNLLSCPTNPDAPTGEPV* |
| Ga0150957_1099127 | Ga0150957_10991271 | F065855 | TAQAATGVWDTFVASTDRSTNDPTVDIGIASLNIEGSGVGGKMNRVGMHQLTYAKFTGNTFLRGVASNGPRDYSYEPGTSELSGIPGVGLVLDNSVRQGDVYCVDTELEPTCALFQGPQRVGSQHDEETGDDKYFVIDYHLASIIQSETGRQITGAITPLAW* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |