NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300013051

3300013051: Enriched backyard soil microbial communities from Emeryville, California, USA - RNA 3rd pass 30_C BE-Lig BY (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300013051 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127392 | Gp0191755 | Ga0164274
Sample NameEnriched backyard soil microbial communities from Emeryville, California, USA - RNA 3rd pass 30_C BE-Lig BY (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size36112040
Sequencing Scaffolds19
Novel Protein Genes20
Associated Families15

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea3
Not Available9
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora2
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Variosea → Cavosteliida → Cavosteliaceae → Planoprotostelium → Planoprotostelium fungivorum1
All Organisms → cellular organisms → Eukaryota3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameLignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: Emeryville, California
CoordinatesLat. (o)37.83Long. (o)-122.29Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003009Metagenome / Metatranscriptome513Y
F003289Metagenome / Metatranscriptome495Y
F004148Metagenome / Metatranscriptome450Y
F004248Metagenome / Metatranscriptome446Y
F005470Metagenome / Metatranscriptome399Y
F028375Metagenome / Metatranscriptome191Y
F044934Metagenome / Metatranscriptome153Y
F047414Metagenome / Metatranscriptome149Y
F049342Metagenome / Metatranscriptome146Y
F057919Metagenome / Metatranscriptome135Y
F065812Metagenome / Metatranscriptome127Y
F069541Metagenome / Metatranscriptome123Y
F071833Metagenome / Metatranscriptome121Y
F071840Metagenome / Metatranscriptome121Y
F104185Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0164274_100588All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea4304Open in IMG/M
Ga0164274_100802Not Available872Open in IMG/M
Ga0164274_103623All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea1597Open in IMG/M
Ga0164274_104138Not Available807Open in IMG/M
Ga0164274_104953All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora2922Open in IMG/M
Ga0164274_112589Not Available723Open in IMG/M
Ga0164274_114818Not Available1195Open in IMG/M
Ga0164274_116379All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Variosea → Cavosteliida → Cavosteliaceae → Planoprotostelium → Planoprotostelium fungivorum681Open in IMG/M
Ga0164274_117930All Organisms → cellular organisms → Eukaryota842Open in IMG/M
Ga0164274_128463All Organisms → cellular organisms → Eukaryota709Open in IMG/M
Ga0164274_129361All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea741Open in IMG/M
Ga0164274_140145Not Available646Open in IMG/M
Ga0164274_140795Not Available735Open in IMG/M
Ga0164274_145809All Organisms → cellular organisms → Eukaryota728Open in IMG/M
Ga0164274_146064Not Available651Open in IMG/M
Ga0164274_150605All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium511Open in IMG/M
Ga0164274_150808Not Available701Open in IMG/M
Ga0164274_153770All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora1297Open in IMG/M
Ga0164274_156777Not Available532Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0164274_100588Ga0164274_1005881F003289M*GNIVTEVALQTNFGVGFNNMQSDVLIHLTQ*QY*W*F*FSFL*AFYYLVILRIIRFRTLKFRPRLATTYRPHGK*GDLIICLIPIS*CINIITNSSFILRMIE*QAETGLLTVRIRGKQWYWIYKFELKTFTDILTVPKNIGRNK*QISTPGDLQVADDYLHILQL
Ga0164274_100588Ga0164274_1005887F003009YQRTYFNVNIGNLVKYFSILTVAFHDVHSLFGFFILLVVFSQLISGTMLSFSLVPESMMVPLVRDEEDLEDLYTDDFF*
Ga0164274_100802Ga0164274_1008021F047414PFMKKESTAGLTLDTRMSPFFGKDLSPRMHRDSLMLSPLFSSNNQHGSFFSGFTPRYFSNVPHMQDNSKTFGPDDFLLRPSPTHMEIDVNARFEKAVENMKMELRNNPVQHLGDHGMDQQGLNLDIDLIDDSYLHAPLTKSPHLQFVGSQPTSKCSFKKFGEWTLSPNASFLPRKKF*
Ga0164274_103623Ga0164274_1036232F003009LVWFQRNYFNLSILNLVKYFSTLTVAFHDIHSLFGFFIILVVMSQLVSGTMLSFSLVPEAMMVPIVRDEEDIEDLYTDDFFLNTRARC*
Ga0164274_104138Ga0164274_1041381F071833QDPQQNINLVQILIKRKLIEPFEKLSRESVECYNLQKGTKEANGEYATRVNKCLDSWQKHFESVEDHTNKYLSNLRAKEALHFSKLFHCSNAINEKDIEVCRREENQRFANELKETFSQL
Ga0164274_104953Ga0164274_1049537F071840MNDVYGLYTSYYILNSFEFLMVGLLLLFASIVCVNLSKFNRNIKLNNYYELLTLYDFFNDFVNFLFMRKQNLNNQTIATVSTRIFKKKINK*
Ga0164274_112589Ga0164274_1125891F028375MNLAQECKVWLNTYPKFNWRHTFDFLLSNELTKAVEFSDYGVACFVKGLQAELVHKDYTEAFSWYENGAIQLDSLCLFRLHEIYIGDTNFKVEYNEEQAMIHLLYSALLSQFEVFDQKVSFWQKFDSFWKKEALKTTYLQKLILDPPAYYLVPTGPLFSKLFAFYNNKNSFLDVLPEIKELSIDTLKNKFFPIVNALFDFLAYTYNSGFSKLDLEKYVENILDMLTNDILFDNF
Ga0164274_114818Ga0164274_1148181F049342WAKLEACWKKDAAHKDYLMELLNNPPADYLQSTGPLFAKLFTFYNNKETFIDLLPELKALSIDVTKNKFFAILNAIFDFMAYTYNSGFSKTDLEKYVETILDMLTNDILFENFFQNYVAHLRIIRAKKKFAFLFQRRLETDCFWVWSFSFLASMKNHYLGLLLSFEETFLEGGLILKWKNTESWVNNFIAFCYEKGIGTRKNLAKAAQLYKKDIDQMPRVLYSRYRKVLVVKEKRAHGLQLSQEEENINVDEQAEDLKLKIEERLEDTTRMDCYLFYVYGKIYEKIDEDNDRAIEWYQKGVDVDTDSCLKNHLLCNEAWRLKCKKRLLKLQARKGLQVSIVNKNRED*
Ga0164274_116379Ga0164274_1163792F004148GGNNVKGLFWMETVFPSPDGRSIIPPEKLQKEYEKGTLRPPDPNAEKEVDGDMDEKVDKVIRDVFNNYDPKGTGQLPKKVMERFFKDSLDVYALRKGFKKGSEVLAPGIKMGQAMQQSLAKITANPQFCTFKEFEDFLNCYDLEEALGSFIGVQEIAIQDRVEFVDTSGLKADAAKPKAVVYRDYSALEN*
Ga0164274_117930Ga0164274_1179301F065812MGDKLLLKLNNEYEDKENKYCEGKVKRTLKRGLKDLKSLRRKQ*
Ga0164274_128463Ga0164274_1284631F005470VQMSSIKLRKEGQLITEFPPEMVARSRLLTKLVEEFNSTEVDLEPAPGKDFSPAIINKVKEFLEKFDKGLTKMPKKPLLIFVTYNDWLDNNFDEKLREWLEEFLKPKSFYDLVELFNAAFYLQIDDLREICAARIAHSIILERKAPEDFLRDFGIVTQYQDFFTPEEEAKFIEKEFINKNDFEGVAAEDEEELNKE*
Ga0164274_129361Ga0164274_1293611F003289M*GNIVTEVALQTNFGVGFNNTKSDVLIHLTQ*QY*W*F*F*FLFAFYYLIILRIVRFRTLKFRPRLATTFRPHGK*GDLIICLIPIS*CANIITNSSLILRMIEWQAETGLLTIRIRGKQWY*IYKFELKTFTDILTVPKNIGNNKWIVSTPGDLQVSDDYLHILQLRSQNK*VHDF*NDLIQKFSKKKDFNLISPQEQLKYDFYETFNKIFLYKMYRSSTLNLQNFNLAFD
Ga0164274_140145Ga0164274_1401451F069541NNKNPNFVVSQKAPDKIMSVSNEIKNWLETYPRLNWRLTFDFLLAPENSKAVEFSDYGVACFVKGFQKEFIDRDYNEALNWYETGAMQYDSLCLFKLHEIYIGDTHFKVPYNERQALCHLIYSALLSQFEIFDTKVSFWQKFEAFWKKESSKTAYIQELLISPSADYFVTTGGLFSKLFTFYATKNNFPDILPELQNLSIDILKTKFFSIINAMF
Ga0164274_140795Ga0164274_1407951F028375LKAIEFCDNGIACFVKGLQYEHDKDYHEALNCYENGAMQLDSLCLFRLHEIYSGDTNFGVEYNERQAMCHLAYSALLSQFETFDHKVTFWAKLEAFWKKDAAHKDYLMELLNNPPADYLQSTGPLFAKLFTFYNNKETFIDLLPELKALSIDVTKNKFFAILNAIFDFMAYTYNSGFSKTDLEKYVETILDMLTNDILFENFFQNYVAHLRIIRAKKKFAFLFQRRLETDCFWVWSFSFLASMKN
Ga0164274_145809Ga0164274_1458091F005470FNLLNTDMSVKVRKEGQVITEFPTDMVPRSRLLTKLVEEFNSTEVDLEPAPGKDFSPATINKVKEFLEKFEKGLHKMPKKPLLIFVTYNDWLDNNFDEKTREWLEEFLKPKSFYDLVELFNAAFYLQIDDLREICAARIAHSIILERKAPEDFLRDFGVVTQYQDFFTPEEELKFIEKEFINKNDYEGVAAEDDEELNKE*
Ga0164274_146064Ga0164274_1460641F071833MNLSADYTQDPQQNINLVQILIKRKLIEPFEKLSKENVECYNLERGSLEGKPQYFERVNKCLDSWQRHFERVENSTNQYLSKLREKEASHFSKLFHCSNAINDPEIQACRREENERFANELKETFSQL*
Ga0164274_150605Ga0164274_1506051F057919MFIHYLVFFILLVVFSQLISGTMLSFSLVPESMMVPLVRDEEDLE
Ga0164274_150808Ga0164274_1508081F004248MTNIVSYGQYLDKKQIYDIVPYIDIKPEDLGTSDTYHEDKILQKFMSYKEDDRILIYKAALQLSIVGYGNKNYGFVRINDKDIIMLEDIFKRYNIKYMEKINAKYNDDDLSVRRLLRLFRFQIQDFIRTHNRPSFLWLKYAEKINKDFMYICFPGGEHLIETKEEAEFFLNTYGNLDNIINSKFRQRLQRIFIARNILQ
Ga0164274_153770Ga0164274_1537702F044934MSTTISFTNLLITRRTLSMPGLRNRRVLLPFITISLFLTMRMLALVTPVLGAAMIMLLLDRH*
Ga0164274_156777Ga0164274_1567771F104185ENVIKVWKYDEEKKKVEQYKTIKAKGSYPDCIVSNEDESQLLFTSRDSFLESYDFATEKTTQISLNPHIKKTNALVFLENMGKVSVSDYTSGNICFLN*
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