| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300012921 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0126277 | Gp0191825 | Ga0164290 |
| Sample Name | Contaminated culture microbial community from soil near Moab, Utah, USA - Microcoleus steenstrupii SON62 (Illumina Assembly) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 347988676 |
| Sequencing Scaffolds | 13 |
| Novel Protein Genes | 13 |
| Associated Families | 12 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 3 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Sediminibacterium → Sediminibacterium goheungense | 2 |
| All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Pirellula → Pirellula staleyi | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Genome Sequencing Of Microcoleus Cyanobacteria Isolates From Utah, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Desert → Contaminated Culture → Genome Sequencing Of Microcoleus Cyanobacteria Isolates From Utah, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | desert biome → desert → soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Moab, Utah | |||||||
| Coordinates | Lat. (o) | 38.5733 | Long. (o) | -109.5498 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F020734 | Metagenome / Metatranscriptome | 222 | Y |
| F021521 | Metagenome / Metatranscriptome | 218 | Y |
| F022012 | Metagenome | 216 | Y |
| F031609 | Metagenome / Metatranscriptome | 182 | Y |
| F038305 | Metagenome | 166 | Y |
| F063207 | Metagenome | 130 | N |
| F072990 | Metagenome | 120 | Y |
| F081097 | Metagenome | 114 | Y |
| F085354 | Metagenome | 111 | Y |
| F098846 | Metagenome / Metatranscriptome | 103 | Y |
| F103798 | Metagenome | 101 | Y |
| F104510 | Metagenome | 100 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0164290_1000038 | All Organisms → cellular organisms → Bacteria | 492251 | Open in IMG/M |
| Ga0164290_1000087 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia | 335511 | Open in IMG/M |
| Ga0164290_1000172 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Sediminibacterium → Sediminibacterium goheungense | 241278 | Open in IMG/M |
| Ga0164290_1000184 | All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Pirellula → Pirellula staleyi | 236350 | Open in IMG/M |
| Ga0164290_1000251 | All Organisms → cellular organisms → Bacteria | 203043 | Open in IMG/M |
| Ga0164290_1000401 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae | 145808 | Open in IMG/M |
| Ga0164290_1000753 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 83300 | Open in IMG/M |
| Ga0164290_1001296 | All Organisms → cellular organisms → Bacteria | 40819 | Open in IMG/M |
| Ga0164290_1002317 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Sediminibacterium → Sediminibacterium goheungense | 14296 | Open in IMG/M |
| Ga0164290_1017395 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | 1634 | Open in IMG/M |
| Ga0164290_1020296 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales | 1404 | Open in IMG/M |
| Ga0164290_1023286 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium | 1210 | Open in IMG/M |
| Ga0164290_1046654 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium | 591 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0164290_1000038 | Ga0164290_1000038131 | F081097 | MVKHTVLAFMLVAAVSVPASAELRRVEIKTLGMD* |
| Ga0164290_1000087 | Ga0164290_1000087142 | F072990 | MEITMATESLAEAVRALTPQEQEAVRRFIDYLKRRDISVSSQSPFLLAAEEFMAQHPELLQRLAQ* |
| Ga0164290_1000172 | Ga0164290_1000172110 | F021521 | VIPSRAKGEKMAGYSHRTAQPPILAAFLPWGGSAGAGRVRPAAAKVRVDTYFP* |
| Ga0164290_1000184 | Ga0164290_100018430 | F085354 | MAKKLAEPKPAAPAPPKPEERFVELMLVAADFVQSCGGLEPAKKALADAGKFVESAGGVGNATRALEVLENLKEKIGS* |
| Ga0164290_1000251 | Ga0164290_100025137 | F022012 | MEQAIPFRGARAARHGRQSNMKKLLILACALVIATSAFAAQGKPIKAKYSGVVEQYNAETKTLTVKRKDNKQGEFVLTETTELLDGNAKAEIAALSVGRKVDVEFVMDGAKKVLVKAKVSGAATTK* |
| Ga0164290_1000401 | Ga0164290_100040116 | F020734 | MTEVLLASGVALDLVGAAVLAHAHNAESIVELREEAGEEGAALGQPDAFSTHAQLLAEKRIGFLLLTVGLTLYLCGLVLKSPEDLTLMASIALGVVAAGVAISVVFTQAASQRILEQARRAESKQDPEELPEQ* |
| Ga0164290_1000753 | Ga0164290_100075329 | F104510 | LTLHTDAQKLNWSMIGVIVALCIQAAALVFGLGGLTQRVTNLEKIVAPLSDGTLARLDERTKAMKDQLDRIEREGA* |
| Ga0164290_1001296 | Ga0164290_100129632 | F103798 | MSPATPPSRRRRTRLPDALPLRIAPEIAAGDETRDRRGAEEQLALCEPDHLRRLEQPLRYGFADRSSARKGLEVAAGVAIADRLGSIRQTAGPPIGRHGYMAIVWLGSRWLQLESAAASAVPFTQYRLLHDFGWQDSGRNARHALKRTLLNLQEARWEGEVNDPLTGRKTHEDHFGIIDRVLWPVVEDGRVERLGYIFLGSWFLEQLRNEAGAYLDWAIVRDLPPIARKLYGLLENDRFEAGDEGEEWQAYWLGPPLFASVGSTCSRERDNVAAVWRACEAITAQDPRYRFARERVVVEGRVSQQVVVTRTPRAQVRRLPRVAAVVPPGGAPGAPAVGRAS* |
| Ga0164290_1002317 | Ga0164290_10023178 | F021521 | MAGYSHRTAQPPILAAFLPWGGSAGAGRVRPAGAKVRVGSYFP* |
| Ga0164290_1017395 | Ga0164290_10173952 | F063207 | MTNPQNHGASGSKTRPDVFDDENIPVSQRLGNFSDSVFGFVFNPNTIKFGILVFAGVCAAINLSGYYDVGTQLMSIKLDEYGREIPVNAPVGERIISSLVRIPLIGQLILWLDKLTGDLAALVIAIGAWFFIQGLEIASRFYLYFPEAAENLLFKLNRKRYEAPANNPGAKKAYKLATGSTNLILRWLAIIGFVAYIVDAYTMHLSRAWTDHLGNPLWLNVLWNSLAVVGVELSMLLYRGYKAVTLSAAEKAERDTSR* |
| Ga0164290_1020296 | Ga0164290_10202962 | F038305 | MAGWGDDPTLAELRALVYEEGWTPVEVAEATSGDRVVVAGPDGERRTFSSDHIAFHRFVEGLHEDFDIPPTAASDPGGPSGDE* |
| Ga0164290_1023286 | Ga0164290_10232861 | F031609 | ESNVLAAPKCREGLEPRNRQKPGGNGGSALELASLAPYVEKHLADEVFRDLFIPYEPKPETEHPDMVPSVKHLHGEPVALSDPSDQNFV* |
| Ga0164290_1046654 | Ga0164290_10466541 | F098846 | MEPGTERYGVSDIVYDIIQTVGNLLQGQEKLQEYAVDADRAGDQEAAAAFRTIAEANRAGAQVLLGRLRVHLNEHQDYKD* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |