NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300012829

3300012829: Enriched pill bug-associated microbial communities from UW Madison campus, WI, USA - HID1972I_E11 MG



Overview

Basic Information
IMG/M Taxon OID3300012829 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121620 | Gp0191456 | Ga0160467
Sample NameEnriched pill bug-associated microbial communities from UW Madison campus, WI, USA - HID1972I_E11 MG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size101569117
Sequencing Scaffolds7
Novel Protein Genes8
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameCharacterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities
TypeHost-Associated
TaxonomyHost-Associated → Insecta → Digestive System → Unclassified → Unclassified → Insecta → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: Madison, Wisconsin
CoordinatesLat. (o)43.073Long. (o)-89.4011Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001417Metagenome / Metatranscriptome699Y
F001784Metagenome / Metatranscriptome635Y
F006009Metagenome / Metatranscriptome384Y
F006745Metagenome365Y
F021521Metagenome / Metatranscriptome218Y
F024540Metagenome / Metatranscriptome205Y
F042653Metagenome158Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0160467_100001All Organisms → cellular organisms → Bacteria → Proteobacteria1734829Open in IMG/M
Ga0160467_100009All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes588364Open in IMG/M
Ga0160467_100011All Organisms → cellular organisms → Bacteria → Proteobacteria466728Open in IMG/M
Ga0160467_100066All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria156141Open in IMG/M
Ga0160467_100159All Organisms → cellular organisms → Bacteria → Proteobacteria94063Open in IMG/M
Ga0160467_100361All Organisms → cellular organisms → Bacteria → Proteobacteria47243Open in IMG/M
Ga0160467_112909Not Available703Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0160467_100001Ga0160467_1000011158F024540MTSVTVRLTDREIKMLKARTGEKDASAALKAWVSRANPKRSATELRTALRDSLKEEAAGKGKTFRSGRDALRWLGS*
Ga0160467_100001Ga0160467_1000011169F024540MTSVTVRLTDREIKMLKVRTGEKDASAALKAWVSRANPKRSAAELRTALRDSLKEEAAGKGKTFRSGREAMRWLGS*
Ga0160467_100009Ga0160467_100009357F021521VASYLYRTAQPLILAAFLPWGGSVGAGRIRLAAAKVGGIMKRIKF*
Ga0160467_100011Ga0160467_100011323F001417MESSQLDAIHAALVAVQRAITSMTFSSCDKDDVIELIDRVESELRSAHPNVPLMGSFLNSIARSLRNQPEAREACLAIEEAINGAGLPSTWQSGI*
Ga0160467_100066Ga0160467_10006687F006009MTSGEQKMLVRGVAAGTIMGLALGLMIALCIAMKPQFFAGLIQ*
Ga0160467_100159Ga0160467_10015971F001784MGEVIHANFGTEREWEQTHDKTVDGLLTIGTLFGDDEALMRAKADCVYHILRQIVEEIPSVQITTRMPDNLTEEQLAMLTESIRQAALKGIEVAMTHSVQVLMSSIYDLCTSKLKTRPS*
Ga0160467_100361Ga0160467_10036120F042653MDMKEWVLYVMTWASQLSGYPFPDSLPQVQWEPESWFSHRVCKDRIPCPVLGLYEDGEVVYLRNDLTDAAKDHIAVHEFVHYLQHESGKFDPDSCFDSDKREQEAFRVQSRFIAEVQGGFTRFGINHLACGPHQ*
Ga0160467_112909Ga0160467_1129092F006745VRTSRHAPRTSSAVVVYVIVLVAFQVFLLTVAVEAFAADDETLAWTTATVSVVMAGGAAVLLRYLRP*
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