Sample 3300012740

3300012740: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES018 metaT (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300012740 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0126301 \| Gp0177772 \| Ga0157533
Sample Name	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES018 metaT (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	33005861
Sequencing Scaffolds	41
Novel Protein Genes	61
Associated Families	46

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	17
All Organisms → cellular organisms → Eukaryota	5
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	7
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium → Paramecium tetraurelia	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Suessiaceae → Polarella → Polarella glacialis	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	2
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Trebouxiophyceae incertae sedis → Elliptochloris clade → Coccomyxa → Coccomyxa subellipsoidea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → oligotrophic lake → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Wisconsin
Coordinates	Lat. (^o)	46.008	Long. (^o)	-89.701	Alt. (m)	N/A	Depth (m)	4
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000023	Metagenome / Metatranscriptome	5736	Y
F000049	Metagenome / Metatranscriptome	3277	Y
F000051	Metagenome / Metatranscriptome	3266	Y
F000086	Metagenome / Metatranscriptome	2462	Y
F000155	Metagenome / Metatranscriptome	1877	Y
F000191	Metagenome / Metatranscriptome	1666	Y
F000212	Metagenome / Metatranscriptome	1580	Y
F000237	Metagenome / Metatranscriptome	1498	Y
F000939	Metatranscriptome	827	Y
F001099	Metagenome / Metatranscriptome	778	Y
F001583	Metagenome / Metatranscriptome	668	Y
F003666	Metagenome / Metatranscriptome	474	Y
F004777	Metagenome / Metatranscriptome	423	Y
F005818	Metagenome / Metatranscriptome	389	Y
F007922	Metagenome / Metatranscriptome	342	Y
F009117	Metagenome / Metatranscriptome	322	Y
F014475	Metagenome / Metatranscriptome	262	Y
F016362	Metagenome / Metatranscriptome	247	Y
F016926	Metagenome / Metatranscriptome	243	Y
F018682	Metagenome / Metatranscriptome	233	Y
F024466	Metagenome / Metatranscriptome	205	Y
F030342	Metagenome / Metatranscriptome	185	Y
F037549	Metagenome / Metatranscriptome	167	N
F039008	Metagenome / Metatranscriptome	164	N
F039655	Metagenome / Metatranscriptome	163	Y
F042149	Metatranscriptome	158	N
F042756	Metagenome / Metatranscriptome	157	N
F043264	Metagenome / Metatranscriptome	156	Y
F044875	Metagenome / Metatranscriptome	153	Y
F047079	Metagenome / Metatranscriptome	150	Y
F053251	Metagenome / Metatranscriptome	141	N
F054473	Metagenome / Metatranscriptome	139	Y
F055363	Metagenome / Metatranscriptome	138	Y
F056563	Metagenome / Metatranscriptome	137	Y
F057415	Metatranscriptome	136	Y
F063286	Metagenome / Metatranscriptome	129	Y
F063303	Metagenome / Metatranscriptome	129	Y
F064420	Metagenome / Metatranscriptome	128	N
F069611	Metagenome / Metatranscriptome	123	Y
F073598	Metagenome / Metatranscriptome	120	N
F079587	Metagenome / Metatranscriptome	115	N
F082151	Metagenome / Metatranscriptome	113	Y
F083748	Metagenome / Metatranscriptome	112	N
F083750	Metagenome / Metatranscriptome	112	N
F091400	Metagenome / Metatranscriptome	107	N
F097458	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0157533_102674	Not Available	590	Open in IMG/M
Ga0157533_103078	All Organisms → cellular organisms → Eukaryota	530	Open in IMG/M
Ga0157533_106723	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	870	Open in IMG/M
Ga0157533_107002	All Organisms → cellular organisms → Eukaryota	1458	Open in IMG/M
Ga0157533_111589	Not Available	2351	Open in IMG/M
Ga0157533_112083	Not Available	764	Open in IMG/M
Ga0157533_113214	Not Available	892	Open in IMG/M
Ga0157533_113592	Not Available	589	Open in IMG/M
Ga0157533_117057	Not Available	1560	Open in IMG/M
Ga0157533_123861	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium → Paramecium tetraurelia	594	Open in IMG/M
Ga0157533_125803	Not Available	534	Open in IMG/M
Ga0157533_126028	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Suessiaceae → Polarella → Polarella glacialis	563	Open in IMG/M
Ga0157533_127753	All Organisms → cellular organisms → Eukaryota	519	Open in IMG/M
Ga0157533_128981	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis	850	Open in IMG/M
Ga0157533_129948	Not Available	986	Open in IMG/M
Ga0157533_131273	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	596	Open in IMG/M
Ga0157533_131950	All Organisms → Viruses → Predicted Viral	1522	Open in IMG/M
Ga0157533_133286	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1111	Open in IMG/M
Ga0157533_133406	All Organisms → cellular organisms → Eukaryota	514	Open in IMG/M
Ga0157533_133623	Not Available	650	Open in IMG/M
Ga0157533_136551	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	509	Open in IMG/M
Ga0157533_137066	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	737	Open in IMG/M
Ga0157533_137449	Not Available	587	Open in IMG/M
Ga0157533_138156	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	821	Open in IMG/M
Ga0157533_139127	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	728	Open in IMG/M
Ga0157533_139954	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	762	Open in IMG/M
Ga0157533_140398	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	518	Open in IMG/M
Ga0157533_141636	All Organisms → Viruses → Predicted Viral	1032	Open in IMG/M
Ga0157533_142346	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Trebouxiophyceae incertae sedis → Elliptochloris clade → Coccomyxa → Coccomyxa subellipsoidea	719	Open in IMG/M
Ga0157533_146886	Not Available	589	Open in IMG/M
Ga0157533_149903	All Organisms → cellular organisms → Eukaryota	543	Open in IMG/M
Ga0157533_151039	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	647	Open in IMG/M
Ga0157533_151779	Not Available	992	Open in IMG/M
Ga0157533_156111	Not Available	758	Open in IMG/M
Ga0157533_159587	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	519	Open in IMG/M
Ga0157533_161171	Not Available	689	Open in IMG/M
Ga0157533_161747	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	657	Open in IMG/M
Ga0157533_162386	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	744	Open in IMG/M
Ga0157533_163078	Not Available	523	Open in IMG/M
Ga0157533_164158	Not Available	618	Open in IMG/M
Ga0157533_164335	Not Available	662	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0157533_101185	Ga0157533_1011851	F079587	STMLSTLALATMIPTAFISIDTSPFFYNDLMAVQAMMRPPPSSSWRCTDEECMMSYPVSHLEDASLRLVLGDDGKTITLSGERKIEGCQCQPRDDVIITLPFTPSAPEALSSSIDKGRLTITLSKHAKIPEAKTILIKRQEPKTADASQIRFVPQESASASVVEEKMLDAFDKFRAVAALARKDGQETPAQASNASETVNVTAQA*
Ga0157533_102674	Ga0157533_1026741	F016926	MMLVPLALVVIVGTASAQVNYGNNERRDYSAKLLRDGIQTSLWTAETGNANYWALPQGSVWQCKGDNNGPYGILAGAREFAKCVSGVSDWTDFFNKLGSPTVTTDFDDWRAICDCWGDTTDDPLFNSPNKRHFADCFLDAVGGCGDGSATAKARLDAQERAFLTVVLRTIGQAGDTQAVLTQRQTLL
Ga0157533_103078	Ga0157533_1030781	F014475	NDGLDVGYSLGRSDESEVGTIDGAPLGFSVGKTVGSRVGKVLGTIDG*
Ga0157533_105084	Ga0157533_1050841	F030342	SQSLEQMTAGDSSDTDLMATLDFDEFIECLARCARDKYGEIKLMSLADGVRGVIQNILGEKSDEAVIRDATYIHAERYNWKLAKPLPGQTLAAHRKWLDCWQNIEIADLHYFPIWEKSVFGCLQECFSDLTNIFAHYSKSIGGSTTAEDAVEMTMSEFKDFVKDVSLETKDLRFDVMQNMFKKANALNNNDAHFQRKAEQGTSAAKEETAGSTSKALATTSPGRSKKAAAQRDDELDQELVLYEFVEVLIRISFWRSNPYHGIHKLATKLIPLPDCLVQMLQEVVLPNAKRDDSALFKEKLATDKALQSAIESYDSKLK
Ga0157533_106723	Ga0157533_1067231	F044875	RSISEDSAEDAMEMSMDEFHDFVVDVGLETKQYKFDVMCNQFIKANATNSAQVRAQRQDEKRDAQSRGNDEPQWKKKPAAKLKGTSSGEEAKKDQELVLYEFLNMLVRIAFWRANPTFGNFVDKDKDGKKDKEEPTPVAYALSNMLNEIILPRAKRENSAAFRQKEMQDSKLIAVLDSYKPKLKEWYDKKVSDDSEGPRNGIISDKLGFEEWNRVLDRQDIVGEWEIEQMSEITGDESTKGNIKVRLSIPTCKAAFMDSQNAEQLGVGQADSTSEQAVLDFDEWLECIA
Ga0157533_107002	Ga0157533_1070021	F014475	DGMVINGFTLGTNDGLDVGYAIGSSEESEVGIIDGAPLGSSVGKTVGSRVGKVLVGEQF*
Ga0157533_110934	Ga0157533_1109341	F082151	KEFFLFNSKDVPLSLPREAGCQLDNTLQISQIAVFDPFGTNVALNAPCDTANPLVSDRLIPYLPAGPLNVYPSLTSCARAVDGNLANRNGDEIFQSTEPDSDSVTYDLGRNVLMKRIMYWNRKDCCQNMIAGATLDVLNENGDVVNSEVFTDKLVQAFNFPSSQSLATLFADCNYGGAQFAIG
Ga0157533_111589	Ga0157533_1115891	F003666	RVRIHGGEFGESARAIHRIELEKSSSSRIKEIPWFD*
Ga0157533_112083	Ga0157533_1120831	F016362	ESSVRCSYSEVRQTVEISMQPVPPSFQPQPPLTSAGLPVTSAGIPITIPGQTTFEAGQPIVTPQQPLQIQLPPTTAFRQVAVQQQLPQQQVIVQQAVTTPVPVSNTGAASTNMGIDFTNMNVVVQAVAMQPVVTPAPSQLFTTEAYTVPGGVSFQPQPPITSAGPMITRVGAAQVLPGQPIITARDALTIPQQPIAVQVPRQATRQVPACQTITEPCVRPVCITYSCDCQSVGSCGQLTCGGQQTDTRARLCTC
Ga0157533_112214	Ga0157533_1122141	F054473	VVFGHDLEGGDKDGASMMKDKEFAGSAGASSAQIHTFHSNSRSAPKDVPQMRDQMDNIVFGHEMQDSAGQKRAEELFFELQKGSAGEASVEIGSRSFPSRLEKSSAVGGPAYAWGTLGNRHNEPRGDLKGAIPTDHAGPQYPPNYKGALGAPRDMLARKDCDANYTVGASNQIVKPRHRNDMDSSDARAILEENYRPDKTTSYGTLKSSHLLAPDEKVLGAAGKASRMINDYNAGPFTWVDVDTEEERRLSEFNAGSQKVADILNGDGYLERDTDPKAKMIPDEYNAIKGRKVDKATAALYAKQRELVCGDSIAKLNILQPDLNYAMIDKDGDGVIEADEIAAAGGMQGYVFEDAKSEFEVMMQQKNFGQPKPFGSDPIDSWYGKPDYTTTRKDVERTVQSKLAAAQQKHLSYKPPTATPEGMRRHNFQPAPTIAEAIGTVRQEKVAHGTVHRNAPFGVDE
Ga0157533_113214	Ga0157533_1132141	F055363	EEKKENEEPKKTEPAAKKVAPAKAPAAEATGKTHLYDLDPESFAGLMIKDVFTEVIEKKAVPTIAYLQPGRPKAGMAEEPGLAGVGIENAFDSPQTLTQCADFLRKHITENDYQSAMIVVRKGHMAFPLVWKDKGDKWPCDPKKDGVLMQLEARGARAMFFTELTKEKGKYSIGETHQIDADEFAMLPRLFG*
Ga0157533_113592	Ga0157533_1135922	F056563	ADLVVAVSSGSTLAPESDPRPAVLQIGHALTKAMSKIQ*
Ga0157533_114543	Ga0157533_1145431	F000023	QITAQLGNLQTDFDKKLSHVNRGASAMKPLDAAGGSAGLDTMAEDLDQLKYDVGELKDLLSNNKGEVNHIRRIVLACERDMEDFTAAMDAVNVDLDEMRARVDATHSIITSRQRVEATMTAEISTMRLDIGDIQEALKNHDSWMEDVSNTLQQMQEKEENLTEDIINLKNEMNTELDTKVDNV
Ga0157533_117057	Ga0157533_1170571	F009117	QGSDIVGDDRVGTEFKCRLSVPQAKAAFVNAQKETGGAVDDTTLDFDELLECIARCGCDKYRAVEQIKVGEKVAAMIANILGDLNEDQVITAATYITAERYTPAAAPPKGVSPEVHREWLMTWEMLQLSALPGFPLWEKDVHDVLAGNLESLTSIFRAYAASSLEGSATEMDMEEFHDFVIEAGLITDMYSFDTMSGQFTKANAGSNDTVLELHEFLTMLVRISFFRANPQYGMRLGKDQKNADKFGEEVPLPGCLSDMLTNLVLPNARHDTYAQEFAETTLPLPEVQAALGAQLEKLSQFYELVSAGRPFLELDQWLKTLEGKLLFSDIMVDGYVVRLTEPQARAAFYASAATPSSGLLPDELPVCVARTACDKYKGVTPMGPGAKVTGFLANLLGDDDEEDVVLAATGGKALKD*
Ga0157533_117742	Ga0157533_1177421	F000212	MMIALNASSLRTETSTQCHPQCSWKCDDPHCPAICDPVCEPPKCHTSCAEPKNAICDVKCEKPQCEIKCPDKGCEMFDCPKCVTVCKQPHCVTHCQAPKPECEAVCEEPKCDWKCHKPQCPKPKCELVCENPNCTPKVECCPCAAGGASTSTPFPFFKETE
Ga0157533_118927	Ga0157533_1189271	F000155	KQMKFTAALVATVAANRYDSMNEDDLLVNLESTLSSALSSEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQP*
Ga0157533_122877	Ga0157533_1228771	F000237	DQMTRLMVLHYFTPYYLYLVQLHVMFCHESDSDSGESIYEDKSGSYISFYDAFLKEIQDAYTLFVFVYFLHHFNGSTVNYFFFERNISELDEIRFYGVAPHYFRPLMGLLVISPTHYEGLMMALFFVLLTFLPIIYNYNVYNKHVPTIPMQNSLIQTFAFIIFMMSLYCSASMLPCGRYYYEPEGGYVGNPVKFSYQYIYLYMAFVHHL
Ga0157533_123861	Ga0157533_1238611	F083748	KAAVADFETKTIDGIAKGLRETADGLTALKAAMADCKAAESEVQSLAAALAQMSSPSKLVYHVGKELLVNGKDILALVEGAVTQYKAGAYEGFGKDLGAIVADLVGKPIAPPSVGARVGDDAEAKLIFQGVLEGFVSKELPDVMACVHDSTTTVADFKAAVADFETKTIDGIAKGLRETADGLTALKAAMADCKAAES
Ga0157533_124923	Ga0157533_1249231	F069611	VADVHDDVLQTASDSAALALDSETPKSSPTTVTELPPLTALFSSADDSKGESKLKTDFDVPAMPPTLTADSPNIVPIELLRQEIVVAEVHDDVLQATISSALVAVCSPTPKSSPDKVTELLPLTIKLRDAPDTTAASKLKTGADVPATPTTLTADSPNIVPIELLRQERVVAEVHDDVPQATISSALVAVSSPAPKSS
Ga0157533_125803	Ga0157533_1258031	F016362	QAQACVAQDIDTGAMTPADSSRCTRDEVYTVTDTSLQPVPPSFQPQQPLTSAGIPINIPGQTTFEAGQPIVTPQQPLQIRLPDQQVPRQVAVQPQQLPQPVIVQVATTPVPIQSSGISSTNMGTDLSNLLNLPVQAVQMVAIATPAPSQVFTTVFDTVPGGFSYQPQPPITTQGAMIT
Ga0157533_126028	Ga0157533_1260281	F042149	VTFKKRPFGILRYTPGEGGKGAMVQEVIGKSRYPGDPQGQGFAAGVQGGWVVKTINGADVLTEDFSKIMDILDDEVADPRFSKSVALALEKQGGRKAAPADVPIAITYATIPGYEWKGE
Ga0157533_127279	Ga0157533_1272791	F000237	MLGICLSATHLSDLTLTVFANIFSLINNIYKTYYIVFTNKHLNIDQLTRFMVLHYFTPYYLYLVKLHVLFCHESDTDSGETTYEDKSGSYISFYDAFLKEIQDAYSTYIFIYFFMHHNPGTVNYFFFERNIAELDEIRFYGVAPHYFRPLMGLLVVSPTHYEGLMTGLFFFLLGFLPTFYNLYNTFNKYVCTIATQNSLIQTGAFILFMMSMYCVSSMLPCGRYYYEPEGGYVGNPVKFSYQYIYLYLGFVHHLDLLDHYIFQFSQTFVRKCSSYTTRRGELNTVVVEESKDSNDKNN*
Ga0157533_127753	Ga0157533_1277531	F014475	GMVDGFTLGTNDELDVGYALERSDESEVGAIDGAPLGSSVGKTVVPRVGKVAGTIDG*
Ga0157533_128981	Ga0157533_1289811	F000049	MTFWQENYPFIKDVYLMRQTKMIEWMENVEKAISRIMADKVYTSAEFKRERDNFHALCKDLERGEVKKWLKQILEILMAERGKEERTEQISKLDALIKKHEELIPTVLKTQVKVDLYWKCYAYGDELKPHIEFLDGIMLSSTRDIAPSCIENVEELIERQEKSLNQLETRRAVVRELITKGKQLLENPDKPKFLDGHVKRIEEGWDETKDKAQARLQLLQNTKAAWEGYAEGLESIAVEFEKAEEEMKKVKKRFNLQAAFE
Ga0157533_129764	Ga0157533_1297641	F007922	IRAVRYDVSESQPLKDETPEEHAAFLAEFKQLDLMGLYGFPLWEAEVHDLLHANFKELASIFRSYCKSLGETATSDSSRTMDMEEFHDFVIDCGLETKLAIMKGAEPAVYTFNQMKEQFTRADKSGKGLAGPAANSELVLYEFLNVITRVSFGRINPEYGELTMEHQDTIYPVPFC
Ga0157533_129948	Ga0157533_1299481	F073598	LEIAGSPRNILTYSLLGAYCGVEHSMDTGGFLLYQVQGNSENIILDLEESVPGCEGPGTKGKQPRSLNKALKKKLSEKKTYYVETAKRWAWKQPSLRESVIAQWSK*
Ga0157533_131273	Ga0157533_1312731	F053251	RSDAMASRNALGTLSASMGPMGTADELIRMRARDGEEVTLSCNAARLVGTIKDLMDFATSENGIYAMPAIRASALLLVCKLNDPEYTWPSMDQLYEHSLVQLFNLIEDALYLDAPMALKQIQRAIASRLNGKRALEIRALLGEGSDFGSAEEHAATLAESAFVPESFEEPRQPANSIEPPALLKQPSFSGVLATTDAQ
Ga0157533_131950	Ga0157533_1319503	F037549	VPDHYIDEEREMNDYQMMQIWRGVKFPQKEVEQRVLEFGKQVMHESSDHYYNLGRQEAFHAMKPVLLKALSALDSAHYILMIQPVTPREEALAVDDAIKHLNAILEVL*
Ga0157533_133286	Ga0157533_1332862	F001583	VLSYMHILKKIYLKNYVTAESDGLLGGYAFFFHYIVALGISLSATHLSDLTLTIIANIFSVFNFAYKTYYIIFTNKHLNTDQLTRLMILHYFTPYYLYLVKLHAMFCHESDSDSGENVYEDKSGSYISFYDAFLKEIQDAYTLFVFTYFFLHHFNASTVNYFFFERNISELDEIRFYGVAPHYFRPLMGLLVVSPSHYEGLMMGLFVLLEA*
Ga0157533_133406	Ga0157533_1334061	F004777	STTLACVSNAFGDVFQALSVTVAFVSGTGRPIFSFDAGVASDARRNAPHSGYASVTISGLNFGVGEQTATAGLERGGGGDLGACFTTSWTSGTTVACLSNAFGDVFRAASVTLASVSSTGSPIFSFDAAVVSDMELNAPHSGYASLTVSGLNFGVGEQTATAGLERGGGGD
Ga0157533_133623	Ga0157533_1336231	F016926	ANISSMMLVPLALVVIVGTASAQVNYGNNQPARDYLSKLLLVGNNPSQWTYEGSRSNANYWELPVGSNWQCKGDPNGPYGILAGAREFAKCVSAVSDWTGFFNALGSPTTTTDLDDWRAVCDCWGETLDDPTFSSPIKRHFADCFLDAVGGCGDGGAAAKARVDQQERAFLTVVLRTLGQAGDTDTVLRQRQTLLINLLASPQPVDVPGVHCRFTE
Ga0157533_136551	Ga0157533_1365511	F001099	LDGPFFEAREVGTGPLDKKYERVVPEHFSGDGDDLFMRSMINTYADEGKNGDGSPNGKFTLRESSARAAAAEVLGTHKGLKGAALADYLRTYFPRTWAHFDVNKVGRVGVEVLPQFMRFLASDQTLNLQ*
Ga0157533_137066	Ga0157533_1370661	F042756	KKNHLTITSSSIISYAGIKTLENKIDPFTRMSLGLLATLGLSLSENQTTRNIGLGLGIASLLQLIDIKNGGKITRNDSNIQFYILGENQGVTALNPGQTPNNSIDGLTFKGFNGVFKVSDGVYIELGKDNSVNYSFGFGKLINQNLRSGGYKSKQWVDQQTDLRWKELYDRSI*
Ga0157533_137449	Ga0157533_1374491	F039008	GNTIPRPVPVPVPGPAMPGQTVTVNQLQPVNVPTPVYVPITQAPTMGFVPVTYGCVQAGTTACTAPSNCGSGFLTVTFQCRSSTGQDMSMSPQLCPGSCAAQTQTCQLAACPVVAAQPQFVPGALNNNACPVGSTRILDEATCRAAAIARGAQFVRVETEAQYPVGCQTFQQPNQGLQVFLNLHPTGASDANSAP
Ga0157533_138156	Ga0157533_1381561	F000049	MTFWQENYSFIKEVYDMRHSKMAEWMENVEKAIARIMADKVYTSAEFKRERDNFHALCKDLERSEVKKWLSSILEILMAERAKDQRKDEFDKLDVLIKKHEELIPTVMKTQVMVDLYWKCYAYGDELKPHIEFLEGIMLSSTRDIAPSCVENVDELIERQEKSLVQLETRRGVVKELIEKGKKILENPDKPKFLEGHVMRIEVGWDDTKQKAQDRLKLLQETKDAWVGYAENNETIAADFEKAEEEIKKIKK
Ga0157533_139127	Ga0157533_1391271	F043264	LPNHRRELQTAVSTTAGLTSALANTAVGRIVLASGTYYLTAELSITRSVIIEAEVAGSVVLNGGNVFRVLNINPGSSGVVQVIGLGITGGFISNYWGGGVLVQSGTVT
Ga0157533_139954	Ga0157533_1399541	F057415	MPALDFSLIEQLGRDLHTTSPGIISEDEVCPWTLFLTMALTLLKGVLPYVPRMLPVLISDPEMREKVADTFTSEEFINNIESYFVQNIKNDIQAPINRQIIKSSETIMYFIDVFEGLAKTFFAANADSVETNDVGTTDNKPRTYSGMDYLGEVVNFANALYKFYK*
Ga0157533_140398	Ga0157533_1403981	F005818	MLRGTVLALLLAVVSGLNIQTLTREQIEERYGAVNWDPSVKTTYCYQCVEVSVESTGGASEHQPMRLGRFAVHGSLWENMVPLFKAENNQYLTPDPNSNPIIYYLKWVISETVGGINAGVQNSAYTDGINCPWDIPDQWEYEYQREWFVDPTLKVRCTKFRDEE*
Ga0157533_141636	Ga0157533_1416363	F018682	WDHDLNQQVASPFRPQLPQDGSPHMVKWEPGQMPKGGFRSIIPFCGDGYYDTKQSPTSGGGKKIY*
Ga0157533_142346	Ga0157533_1423461	F047079	LEQFSINKIIPFVLGPLDFSITNSSLLVFVSCSVAFLFYNFACANAKLIPSA*
Ga0157533_143165	Ga0157533_1431651	F000939	AAQAFLKTKIMDNIQKYFYMICFTGYLREQAKLAIDSATEEEKKAFALKGGKLSTPAENLKLNKTFVQWMDEHANFRQICEDGKGNLHWERDIPQDALDNLESLANSDFHKNLGKIIHDIYLTAHNLFMDMPQGDHKKRAKYRFASKTLMRILPDSLKNEVEGLIAKNTMTLDLYEILGQCTWGQRSL*
Ga0157533_146886	Ga0157533_1468861	F039655	FRAILLVAAVGLASAYTCVNDPSTLFVNTTCIVSAPGGFSPGKTISIELAGTTTKQLLAGVFKYQVYEDYVPSFVASGNIAYFNCTQNGCNLNQPIALTLANINAVPTGFTASIPVTIPQPQKTGSYKITYWGEDQDHYPYDITGTLSLVQSCVTTADCPPNSYCKNGPGQSPPYSCQNS
Ga0157533_147705	Ga0157533_1477051	F000049	MTFWQENYPFIKDVYIMRQTKMIEWMENVEKAISRIMADKVYTSAEFKRERDNFHALCKDLERGEVKKWLKQILEILMAERGKEERTEQISKLDALIKKHEELIPTVLKTQVKVDLYWKCYAYGDELKPHIEFLDGIMLSSTRDIAP
Ga0157533_147822	Ga0157533_1478221	F063286	ALMRIFSHYSKGISGIDSAADALEMELEEFHDFVKDAKLETRMINFTTMTNVFAKANASNTAEAFEQRQREKRNSQVQSELEDAAFTKNVNKPISPKKGAFPDVFLDKSGEMDLATMNKGKNAKPDNRLQLTEFLGCLVRISFLRANPKHGQYDNKAKLIELPGCLKKMLEEVLIPNAKQDMSSLFREEIAQDAEVQRVFDEYREKLTYYYNEVNQLTALKGKADNKLSMETWMDICRGYLHFAKRKGLKHMEKSKTSGKAGEGGGLGEGAFVGDCTVSRESDITGDERCKEKFTCRLSTLEAKFAFLNSQSLEQMTAGD
Ga0157533_148688	Ga0157533_1486881	F000086	TIETMFANIQHNYDVMTMTLPEDKKDFVKKEVKAVQEKLEVVGRFEEKVKKIEDFCSALNGFDKTIKMIDTWMKDADGQLNHIKNESDKMTPEDRVSHTMELQEDVAAKVEIIKKAIGTESELLPQGDNVPKDAQDYKDELKRVQDYVNDLHKRVMKECDNFSEDVKFWAEYKTGIKEFRPWLESAEKKSHEGLSKPQTLDEANAMFASVNEFDQACLRHLKILNDAATAANKMTTHKEADTEVKELKERYEKVKAVSDEWVKKVDTLVKEWKLLDTTVNELNSWVAKDRGAEGEQQFSLEKMESTLGELKNIFKQKEKLVENL*
Ga0157533_149390	Ga0157533_1493901	F000237	FTPYYLYLIQLHVLFCHESDSDSGEATYEDKSGSYISFYDAFLKEIQDAYTMFVFIYFLHHFNGSTVNYFFFERNISELDEIRFYGVAPHYFRPLMGLLVISPTHYEGLMMALFFVLLAFLPIIYNYNVYNKHVPTIPMQNSLIQTFAFITFMMSLFCSASMLPCGRYYYEPEGGYVGNP*VKFSY
Ga0157533_149903	Ga0157533_1499031	F014475	MIDGFTLGTNDGLDVGYTLGRSDESEVGTLDGAPLGSSVSKTVGPRVGKVLGTIDG*
Ga0157533_150868	Ga0157533_1508681	F000051	INSWMALATKELEDIKSSAGTMLPEDRVARTMDLQEDIASKMEILVTNAATELELLPQGDKVPSDAQEYKDELNRITKYVTDLQARTKKECDNFSEDVKYWAEYRTGIKEFTPWLVKSEGGCSEGLAKPSNLDEVKQLHEKVTNFDKTCLSYLKVLEAAEAAAQKMTTHAEADKEVAALKARYAVVKSTSDGWVAKVDTLLKEWTLLDNTVTELNSWVAKDKSSEGENQFSLEKMESTLGELKNIFKQKEKLVENL*
Ga0157533_151039	Ga0157533_1510391	F063303	ESMFKNKDERFKKSMELEYAAHVGPGSYSQAEGTVELAFKKQSGKVSSAFASTSLRGDSFIPS*
Ga0157533_151779	Ga0157533_1517791	F097458	IFLSFTFAALLPRRGIHALAYTRGIFSPHMMPIDSGYGLLGSPILFDIHTLVVQRQNKSS
Ga0157533_152143	Ga0157533_1521432	F000191	GNLVNQHVRFIETGNIGLLMTYEKALVTQSRTGEIPPID*
Ga0157533_155381	Ga0157533_1553811	F016362	CCPQGATQCGTRIQAQACVAVNAANGAVTPADPSRCTRDEVYTVTDTSLQPVPPSFQPQQPLTSAGTPINIPGQTTFEAGQPIVTPQQPVAIPLPDRQVPRQVAVQPQQLPQPVIAQVATTPVPVQNTGIASTNLGTDLSNLFNLPVQAVQMVAVATPAPSQVYMTVFDTVPGGVSYQPQPPITSPGALITRVGA
Ga0157533_156111	Ga0157533_1561111	F064420	FSSSNNPLTSSFMFRFIATVATLAAVTMALPVQDAPTFLLQVSDGVASGSCTVTKTAQLLADGARFKETAAAYTEQDPELYKSVTKNADGTFTLVYNKCAGSWWSSCAFKQVPTVTFKVDTTNGLKLTQTGGNVVCGNGADKTCLDVVLKGTTLSATSTVSYSSILNKNLAGAYAAVISSFAQSFFDEAVCHKYA*
Ga0157533_159587	Ga0157533_1595871	F053251	APTAKKAKHEEQIRVRARDGEEVTLSRDSARLMGTLKDLMDLATSEDDVYPMPKIMASTLQMVCKLNDPDYTWPSSDEHSVVQLIQLIEDALYLDAPVVALKHIQGAIATRLNGKRTLELGPLLGAGGDFGSAEEHAASSCEPAFAPEDFEAPQQPTDDELWALLGAGGDFGS
Ga0157533_161171	Ga0157533_1611711	F091400	MIWPGSNGQVAQGTDCDAQETPADEHADDSTWLCTPLHVCTQLAMAVLVPEPQELEQGVNGATLHEKVGQQGRAGHGCVWEVHAAPHIDAGTVEPLPGPETVVHVATLILEPACPQVPEQEPWRLNVHEYSEQIGTVQGDVWVWQPPGQFDAAVGVEGPP
Ga0157533_161747	Ga0157533_1617471	F053251	LTLAMKEGCARATLAEEQEEAPTAKKAKHEEQIRVRARDGEEVTLSRDAARLMGTLKDLMDLATSEDGIYPMPTIMASTLQMVCKLNDPDYTWPSSDEPSLIQLIQLIEDALFLDAPIALKHLQRAIASRLNGKRAPEVGALLGAGGDFGSAEEHAPPNVEPAFVPEDVVEAPQQPASSTLPPEPLQQPSFSADAME
Ga0157533_162386	Ga0157533_1623861	F044875	HPLFKELQLIFLAYTRSISEDSAEDAMEMSMDEFHDFVVDVGLETKQYKFDVMSTQFIKANATNTAQVRAQRQDEKRDAQSRGNDKPQWARDAAAPKKVKGTALGEEAKKDAELVLYEFLNMLVRISFWRANPNFGLHGNKDELVPVALALSTVLNEIILPRAKRENSAAFRNKEMNDAKLLAVLENYKPKLKEWYDKKVLDDSEGKGLVSDKLGFDEWLRVLDRQDIVGEWEVEQMSEITCDESTK
Ga0157533_163078	Ga0157533_1630781	F083750	QMLSSLLCLLIGGFLLVTEALPLVKLTGSELLAAQLGESESLLARPELLDGGLIPDSCETYVNAEQTGAPELRLFLQAVRDANSDLTDVACVHVAKQVTKREIVEMKVAGTSTADQTVVTRLCRVERLRTTAGGRDKEFEPSKQITAAGDSSLTDGEADKIKERNRYRVDACTP
Ga0157533_164158	Ga0157533_1641582	F024466	MMRRMIMVVYTMMMITTDDTGARYDDRAMYVLSDMSHVLDRITDRKIGGIDTLSMGTMMMPCIS*
Ga0157533_164158	Ga0157533_1641583	F024466	DTGARYDDRAMYVLSDMSHVLDRITDRKVGGIDALSMRTMMMPFIS*
Ga0157533_164335	Ga0157533_1643351	F016926	PPPANISSMMLVPLALVVIVGTASAQVNYTYGNNDRRDYSAKFAQFFNVPSQWTHENGFSNYWALPLGSVWQCKGDLNGPFGIVAGAREFMKCVSGVSDWTDFFNKLASPTLYADYDDWRTVCDCWGDTLDDPTFTSPNKRHFADCFLDAVGGCGDGGFAARTKLDQQERNFLGLVLRTLGLADATNPTLYNQRQTLMINLLANPQPVDVPGMHCRFTEP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300012740: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES018 metaT (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences