| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300012630 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0121696 | Gp0175708 | Ga0157209 |
| Sample Name | Freshwater microbial communities from North Martin Creek, Ontario, Canada - S23 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Molecular Research LP (MR DNA) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 21412001 |
| Sequencing Scaffolds | 8 |
| Novel Protein Genes | 8 |
| Associated Families | 7 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 3 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1 |
| All Organisms → Viruses → Predicted Viral | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 3 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater biome → bayou → surface water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Kawartha Lakes | |||||||
| Coordinates | Lat. (o) | 44.58538 | Long. (o) | -78.5941 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000273 | Metagenome / Metatranscriptome | 1401 | Y |
| F000324 | Metagenome / Metatranscriptome | 1299 | Y |
| F019820 | Metagenome / Metatranscriptome | 227 | Y |
| F029893 | Metagenome / Metatranscriptome | 187 | Y |
| F034114 | Metagenome / Metatranscriptome | 175 | Y |
| F042654 | Metagenome | 158 | Y |
| F079806 | Metagenome | 115 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0157209_100707 | Not Available | 2935 | Open in IMG/M |
| Ga0157209_101063 | Not Available | 2388 | Open in IMG/M |
| Ga0157209_101085 | Not Available | 2361 | Open in IMG/M |
| Ga0157209_102702 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1343 | Open in IMG/M |
| Ga0157209_103361 | All Organisms → Viruses → Predicted Viral | 1108 | Open in IMG/M |
| Ga0157209_103838 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 996 | Open in IMG/M |
| Ga0157209_106070 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 667 | Open in IMG/M |
| Ga0157209_107442 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 539 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0157209_100707 | Ga0157209_1007074 | F034114 | MPAIFIEASIAAGAVNNNIYSGSAFEFSRGRNIVSLGIVQSATGMFGTLQSGSDIIVEEFSLPIKTSYPIIPDEMYFTDVMENGDRLVGRVRNPTGGALTVRSVVQMSQV* |
| Ga0157209_101063 | Ga0157209_1010632 | F029893 | MQDSVSVAANSVSANVLSGQLYEFVDPGTQVTVSVTGSATGLRTTFICGVPLINDQAINLQNRFPLVPDDIIHSGQVPGGRMVLTARNTTAGALTYFWRVDL* |
| Ga0157209_101085 | Ga0157209_1010852 | F029893 | VPTMQDSVSVAANSVSTNVLAGQLYEFVDPGTQVTVSVTGSATGLRTTFICGIPLINDQAINLQNRFPLVPDDIIHSGPVPGGRMVLTARNTTAGALTYFWRVDV* |
| Ga0157209_102702 | Ga0157209_1027023 | F000324 | MISCPVKFTVTYDGATLNVYHANKGQGVPRHEHAYAHLTMCHAGSILVTKEGKSLTMTKDTQPVNLVANEWHQIEALEDGTVFVNVFAEGKY* |
| Ga0157209_103361 | Ga0157209_1033613 | F042654 | MLNNNDFISLERRLWREGNPLTDELCSTRDELIYLLSEAKKVMEKYSPVLSTLASSDDLDFYREWDEFGDTLDNISYDLGVDSETQYKLHEVTR* |
| Ga0157209_103838 | Ga0157209_1038384 | F000273 | MAEEKESAKHALIEKVAFAILPILFTCVVYLMNSLSHLSHEVTVLNNKISLVVTSDNKQATNTGAELAREKLRQDLEKEIQKNRDDIMHNRQDIAVIYEKMKGK* |
| Ga0157209_106070 | Ga0157209_1060702 | F079806 | MKATIEYDLSQPSEAYAYKCAHKALEACQMLESLKSLTQGYTAYKGLSESVLADIIQDLSQWDNVTV* |
| Ga0157209_107442 | Ga0157209_1074422 | F019820 | LKPVKISGALYWTKWMAEFNKAFNTDNDKYECTIGNISDDDAAKLTGLGIKVKHKDAMGNFIVAKSKYLFKPTDDNLKEVAIEALGNGSKCVAIVGSYTHRMSAKHGNAPSIKTVMVTEVKTYVPEAATDDEAL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |