| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300012009 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0126207 | Gp0175632 | Ga0153773 |
| Sample Name | Saline lake microbial mat microbial communities from La Brava Lake, II Region de Antofagasta, Chile - La Brava 201312 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | INDEAR Instituto de Agrobiotecnologia Rosario |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 752080516 |
| Sequencing Scaffolds | 8 |
| Novel Protein Genes | 9 |
| Associated Families | 9 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus | 1 |
| Not Available | 3 |
| All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Saline Lake Microbial Mat Microbial Communities From La Brava Lake, Ii Region De Antofagasta, Chile |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Saline Lake Microbial Mat → Saline Lake Microbial Mat Microbial Communities From La Brava Lake, Ii Region De Antofagasta, Chile |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → saline lake → microbial mat material |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Hypersaline (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | II Region de Antofagasta, Chile | |||||||
| Coordinates | Lat. (o) | -23.730056 | Long. (o) | -68.246861 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011196 | Metagenome / Metatranscriptome | 294 | Y |
| F013484 | Metagenome / Metatranscriptome | 271 | Y |
| F015419 | Metagenome / Metatranscriptome | 255 | Y |
| F026445 | Metagenome / Metatranscriptome | 198 | Y |
| F028211 | Metagenome | 192 | Y |
| F029285 | Metagenome / Metatranscriptome | 189 | Y |
| F029940 | Metagenome / Metatranscriptome | 187 | Y |
| F075043 | Metagenome / Metatranscriptome | 119 | Y |
| F083361 | Metagenome / Metatranscriptome | 113 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0153773_1021048 | All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon | 6352 | Open in IMG/M |
| Ga0153773_1022059 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium | 6118 | Open in IMG/M |
| Ga0153773_1070210 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus | 2494 | Open in IMG/M |
| Ga0153773_1073822 | Not Available | 2404 | Open in IMG/M |
| Ga0153773_1082546 | Not Available | 2214 | Open in IMG/M |
| Ga0153773_1085606 | All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae | 2155 | Open in IMG/M |
| Ga0153773_1090324 | Not Available | 2071 | Open in IMG/M |
| Ga0153773_1159672 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 1356 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0153773_1021048 | Ga0153773_10210486 | F029940 | MSSGEDSVDKETFLEKFEELSLRIEQLTEEVSKMKRKLDKRNKIDRSFGLKAIHYSQPLSFTKDVFGIGSPTKEYLLSIRAVTEQWKGRKNDFLIAIRQQEKETQQDLKALGIRIPVSNIKNLRILCREIISLLYIACELKNIEINDILREILTDVNEDGNEMMREIKNKFIF* |
| Ga0153773_1022059 | Ga0153773_10220592 | F075043 | MLSEIRKKQLREMGAPDSKVREIGEKFTWVDQEMDGFGLHRSEKLSEVMTSGDFTYAILEFVQRKMLDSYERKRFDFEPLVKMDTVPNFLPVTRYQNRCGLQDLEFVGEKGQARAGNLADGAKRQWQVWRFEKQFDFSFEALKNDDLGYFENTTDLMGEAARRTLEKYVSRFYTNATSIDALTGAGALYSQTGRLTSTRVSEARMAFNQRTDDCSEPINAQLDYVVIHSGLVDTAQQIQQSTLVPELATNAANIVRRTRFIEDPYITGTAPNLPWWAFSVGLDPLVLARMQGMAGPMILRKRSDIESVTSLLGSGSAVDPILGDFDSGNVVVKVMDVWGTYIDSSNGNLVDIGGAYYSSGTAP* |
| Ga0153773_1070210 | Ga0153773_10702101 | F028211 | MKSIWMGIAPSSERTRVIAMTGPSKPILKACLASDPKHPRALATLLEAVALWQGYPVRAALCVGDSGHSYDSNLYREAFLDDGGALYSVAWVPSGEHRQRRTRLSGLGSFRDLERLVVEEVAR* |
| Ga0153773_1073822 | Ga0153773_10738221 | F029285 | MKNKADYSKYECPYSHLEKESGHELHGPEGYEDVYSVWCTCGFRAPVFYLEPEDLGLKLKNETDVATCA* |
| Ga0153773_1082546 | Ga0153773_10825464 | F015419 | MKYELKVTDENGNEYSYNVMRSSFDESKNLNDFILEALSISEDKRRLPFMIQCPNGLEVHPSLKMKFENYGSSLLGDKLEAMMVTWRD* |
| Ga0153773_1085606 | Ga0153773_10856062 | F011196 | MEVREMGHDATVRAADGYVAQKKAEFLAHAEQAFDRMFGADGQNGLVTFQEREDRACEVGDGLTRWLMAEHLALDPVGGTSIERDCPICGGPVRDESAGQAEMELREFQTLRGKIEYRRAAARCPRCRKIFFPA* |
| Ga0153773_1090324 | Ga0153773_10903241 | F013484 | MNFDFSGCTLSTEHQVIVNALNKFLAWLPDDEGSAALRLALLVLEAANVAPQAVLARVVGLNQDRSVRLYKQRLQEEGLAGLFDHPIPGRPAITTKTEVEKALLQVILEAVIQEHALPDDTFLAERVNQSLQETQEPKVTASMVETIRLRWGIRRPNLTQQLQAAQASASPEPEQARLGQTRVGGAFILAVLLVETGWLQLTHLLPMDANYAVTATQWLLTAIFTVIFGVRRAFHLDDVRDIGFALVTGRPRPLTHGTFQHLLHAISGEKARAFYAATARLVVQALGEGIRRISLDGHNRPRYTRIVDVVKGKIGNTGRILKAEELVLAYDLDAHMWLAVRVYQGTKKLSKGVVEIVEEILKHRGDLDGLLRIFSDKGAYSGRIFQTLAAEARVRFYIPAVRYPSNVEQWEQLQDTDFDRGPFIFDKHADLPEDQRPVYRLADTEMEINVWEDQKVVDTVNLRAVVLHDPEGEKPAERWPVAFLTDDRDIEARTLLNEYGDHWGQEFAHRIGKHDLCLDILPPGYVLRTRRDEQGQLVREVEEDDTAFFLSAWLRCLVFNLMTCFAQAMGGEYTKMWAGTLLRKFIRRPATLYLIDKELHVVFDPFPDQDEFQPLLDKLNAKRTALPWLNNLVVQFRIADEEPLHPLTELEKRNRLFGDG |
| Ga0153773_1140421 | Ga0153773_11404211 | F083361 | VDALNELLTWLPDDDDSEAALRLALMVLEAADIAPQAVLAQVVGLNQDRSVRMYKQRLRDEGLSGLFDHPITGRPAITTKTEVEKVLLQVILDAVIQEHSLPDDSILAERVNQRLQEAQDQEVVHVTASMVETIRLRWGIQRPILTQQLQSTQPSADPEPEQARLGQTRAGGAFILAVLLVETGWLKLCHLLPMAANYAVTAMQWMLTAIFAVIFGVQRAFHLDDERDIGFALVTGRPRPLTHGTFQHLLHRIPGEKARAFYAATAQMEVQSLGEGIRRISLDGHNLPRYTRIVELIKGKIGNTGRILKAEELVLAYDLDACRWLAVRVYQGTKKLSKGIVEIVREILEHRGDLSGLLRIFADKGAYGGHIFQALDAEEQVRFYIPAVRYPSNVEQWEQLQDTDFDSEPFIFDKHADLPADQQPVYRLADTEMEINVWEGQKVIDTIDLRAVVLQDPEGEKPAERWPVAFLTDDQDIDARALLNEYGDHWGQEFAH |
| Ga0153773_1159672 | Ga0153773_11596721 | F026445 | MTSIAETKRKRQNRTVTLHLGNTLAEYQDMISTEKGIREVIRRVEVADSLNWGCLARGHNENCPRRLRFTHHDDYRRWAKHFDGMRSLVTILRVRCLDCGAVFTVHPSFIVRYKRYDTDAIEKFATLLFITEDSYRMAGVSQALGMDKQREGTWVALEETAQTSISPTVLWSLMQWLGQLSPAQLNLALNVAPPTHVIEDEKHTKECGAKTYVPIVYAPKEALIWWIDYIDSVSETALHDSLERFKAISERLTCIVGATVDGWDPAHKALQAAFPGITLAECHFHAMLKLGQHLATYKRQRKKAGRPVSEQEEANIRQAFSDVLNAPTSDAYRKALDALPDAFEHEPLASRKDSLTVKQTLFQAWTTDCQLALVSTALDQCMKFLNRKLDNMQTLHTAQSGLATVNAWAITRN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |