| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300011932 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0118613 | Gp0137477 | Ga0120087 |
| Sample Name | Mine pit pond microbial communities from Vermont, USA - 1S |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of Vermont |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 19784250 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 8 |
| Associated Families | 8 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 3 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1 |
| All Organisms → Viruses → Predicted Viral | 2 |
| All Organisms → cellular organisms → Eukaryota | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Mine Pit Pond Microbial Communities From Vermont, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Geologic → Mine → Unclassified → Mine Pit Pond → Mine Pit Pond Microbial Communities From Vermont, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → mine → alkaline water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Vermont | |||||||
| Coordinates | Lat. (o) | 43.727094 | Long. (o) | -72.425964 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F022834 | Metagenome / Metatranscriptome | 212 | Y |
| F034113 | Metagenome / Metatranscriptome | 175 | Y |
| F037069 | Metagenome / Metatranscriptome | 168 | Y |
| F058946 | Metagenome / Metatranscriptome | 134 | N |
| F068601 | Metagenome | 124 | Y |
| F071028 | Metagenome / Metatranscriptome | 122 | Y |
| F088763 | Metagenome / Metatranscriptome | 109 | Y |
| F095159 | Metagenome | 105 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0120087_100080 | Not Available | 14662 | Open in IMG/M |
| Ga0120087_100674 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 3632 | Open in IMG/M |
| Ga0120087_100806 | All Organisms → Viruses → Predicted Viral | 3101 | Open in IMG/M |
| Ga0120087_102940 | All Organisms → Viruses → Predicted Viral | 1010 | Open in IMG/M |
| Ga0120087_102954 | Not Available | 1006 | Open in IMG/M |
| Ga0120087_104664 | All Organisms → cellular organisms → Eukaryota | 686 | Open in IMG/M |
| Ga0120087_106456 | Not Available | 534 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0120087_100080 | Ga0120087_1000806 | F071028 | MAYMATTPWEYQTWGANKPWPDQYTRLSQRRIAGGTETGVINPFLTDIARGVTLIYINGHIETTLYPYQNTLADADWYILGGHTQEITDEQAAILIAEGYGDYVEPIV* |
| Ga0120087_100674 | Ga0120087_1006743 | F058946 | MWAMNELEMPDDDSPRPNLANIPSMDDMLALYEKVLAELDSAISTQRDFAADDKQSNARHSNNY |
| Ga0120087_100806 | Ga0120087_1008063 | F068601 | VRTKESQENIVELSDIREGRLRALSPYGPVKAGLTTLPTTNEVRLMELLNSLENVVHDLNYKSFTAYDTLNTAIQGVRAALSVTLIEEGGTNE* |
| Ga0120087_102940 | Ga0120087_1029401 | F088763 | KEKAKEGNRKYTGSNPHNKHLHISINDAYGNDVSPWFVWLGTPKTINKVKASLPKPLPKKG* |
| Ga0120087_102954 | Ga0120087_1029541 | F034113 | MAITPSYKAEDSEEYYINKGAVTTPQTNPMVESKYAAGKAQAAATDKVEWPTKVAGRTN* |
| Ga0120087_103537 | Ga0120087_1035372 | F022834 | PHAFRDKARTFLNLATETAEASKRAEEINTLKQELAKKDEETAKLKAETDAKLAQMQEQMAAILAAVGEKKPRTRKPKVVEES* |
| Ga0120087_104664 | Ga0120087_1046641 | F037069 | FMPAIASTAGRLHSEFVRILFLQAHRETDRFFAASGVQLAQTHPGGQFTFRRAAFLTQLQSKVGLALAKAAALRININMDGAPIASKSHTHPSHSQTSRLLTSSFSLGVPVPRPTQCVRGV* |
| Ga0120087_106456 | Ga0120087_1064562 | F095159 | MKMMTERNTQLLLAYINNGAKIETARISAGVDNGEGIPEMYDLDEDMLKAQEHPLAPIANAIAQGNAEMTATLGALIERLNQPKQVVRDETGKIIGVQ* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |