Sample 3300011296

3300011296: Marine microbial communities from the Southern Atlantic ocean - KN S17 250_A metaT (Metagenome Metatranscriptome) (version 2)

Overview

Basic Information
IMG/M Taxon OID	3300011296 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114292 \| Gp0125900 \| Ga0138387
Sample Name	Marine microbial communities from the Southern Atlantic ocean - KN S17 250_A metaT (Metagenome Metatranscriptome) (version 2)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	49645941
Sequencing Scaffolds	35
Novel Protein Genes	39
Associated Families	23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	19
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	6
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium PRS2	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Southern Atlantic Ocean
Coordinates	Lat. (^o)	-28.2362	Long. (^o)	-38.4949	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003733	Metagenome / Metatranscriptome	471	Y
F006551	Metagenome / Metatranscriptome	370	Y
F009424	Metagenome / Metatranscriptome	318	Y
F009522	Metagenome / Metatranscriptome	316	Y
F012879	Metagenome / Metatranscriptome	276	N
F021393	Metagenome / Metatranscriptome	219	N
F025846	Metagenome / Metatranscriptome	200	Y
F030135	Metagenome / Metatranscriptome	186	Y
F031929	Metagenome / Metatranscriptome	181	Y
F036025	Metagenome / Metatranscriptome	171	N
F042932	Metagenome / Metatranscriptome	157	N
F050311	Metagenome / Metatranscriptome	145	Y
F055787	Metagenome / Metatranscriptome	138	Y
F058207	Metagenome / Metatranscriptome	135	Y
F062832	Metagenome / Metatranscriptome	130	N
F063612	Metatranscriptome	129	Y
F076161	Metagenome / Metatranscriptome	118	N
F083530	Metagenome / Metatranscriptome	112	Y
F084730	Metagenome / Metatranscriptome	112	Y
F092215	Metagenome / Metatranscriptome	107	N
F099438	Metagenome / Metatranscriptome	103	N
F103410	Metagenome / Metatranscriptome	101	N
F105006	Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0138387_1000257	Not Available	1175	Open in IMG/M
Ga0138387_1004286	Not Available	519	Open in IMG/M
Ga0138387_1011161	Not Available	517	Open in IMG/M
Ga0138387_1014429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	601	Open in IMG/M
Ga0138387_1016109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	748	Open in IMG/M
Ga0138387_1018646	Not Available	745	Open in IMG/M
Ga0138387_1021743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	744	Open in IMG/M
Ga0138387_1024439	Not Available	638	Open in IMG/M
Ga0138387_1024987	Not Available	628	Open in IMG/M
Ga0138387_1028046	All Organisms → Viruses → Predicted Viral	1804	Open in IMG/M
Ga0138387_1028268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	600	Open in IMG/M
Ga0138387_1031041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	538	Open in IMG/M
Ga0138387_1033829	Not Available	509	Open in IMG/M
Ga0138387_1034707	Not Available	646	Open in IMG/M
Ga0138387_1035480	Not Available	956	Open in IMG/M
Ga0138387_1039374	Not Available	728	Open in IMG/M
Ga0138387_1041248	Not Available	944	Open in IMG/M
Ga0138387_1044582	Not Available	539	Open in IMG/M
Ga0138387_1056729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	586	Open in IMG/M
Ga0138387_1057212	Not Available	500	Open in IMG/M
Ga0138387_1058731	Not Available	525	Open in IMG/M
Ga0138387_1059033	Not Available	592	Open in IMG/M
Ga0138387_1059648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	921	Open in IMG/M
Ga0138387_1079631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	712	Open in IMG/M
Ga0138387_1086869	Not Available	967	Open in IMG/M
Ga0138387_1088392	Not Available	505	Open in IMG/M
Ga0138387_1089500	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	594	Open in IMG/M
Ga0138387_1092849	Not Available	582	Open in IMG/M
Ga0138387_1102035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	518	Open in IMG/M
Ga0138387_1102179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	798	Open in IMG/M
Ga0138387_1103379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	571	Open in IMG/M
Ga0138387_1103745	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	748	Open in IMG/M
Ga0138387_1104675	Not Available	517	Open in IMG/M
Ga0138387_1105872	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	537	Open in IMG/M
Ga0138387_1108667	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium PRS2	684	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0138387_1000257	Ga0138387_10002572	F083530	MELLPNISEFKTEKIGIHEYAAIYEIEKILRRTKADKLIRSQPNYYLERQYKRLTTYAANGQVAEFNHLSKIILSKSICFRILAMNRTQEDWFIMPIRKLRRLWNSLSFISSTLSSDLKYKRVWIDKKEGDYARPLSVPTPAWRCYSFMWMDQIERFYKAGGYL
Ga0138387_1004286	Ga0138387_10042862	F009424	MVLGGIMAKVTKAQHTASGKIPANGLSSLENISGETLASLALTDHGVNQMPMGVVHKSISTDRGKFTFD*
Ga0138387_1011161	Ga0138387_10111611	F006551	VESASGTIGTNGVLTDDTLRTFLRKIRIAAGKDPNVFLGSHEVYSEIQGLYMPSVRIPNPYGESLVQIDVNGIQTFRGTGVGIHVDSIYGIPFIPSKDAPSDSGDASEIGRLFAFDTSDAEGYGYPRIGIQIAIPTEYYEATRRSPAYPFVNNAFVEKGVFRTMGETVCRHF
Ga0138387_1014429	Ga0138387_10144292	F050311	MKALRTKICTYAIALLASIGFATPTLAGSSDFSGIFVAGHAELNVVAIDGTHTDSSSGTNDLGTTSGAIGGFAPTAGYELGFNLPLGDTFFVTLGYADGGGESAAIATSKSPDNNSDVSIRASNPSWYYIAPSISVFD
Ga0138387_1016109	Ga0138387_10161093	F076161	MKSINFSSRRPKTGFRAFAEKPAVKSLLLPQFGGQKMPPQGASIPNRLTAWTVPQIAADPKERCNLISSPTNPDAPTGKPV*
Ga0138387_1018646	Ga0138387_10186461	F030135	ELATLSSFTDIWHSTFAGCQFPDAILPGWEAIDLVAGPLN*
Ga0138387_1021743	Ga0138387_10217432	F012879	MTTHFSSGVTNVKGKQLGTSLFSGIKQPLITGGTTPQEFAYQNDFQTYNASDWQTVTSTGGSDYQLADYAFGWLRQGDGAPTGGEIQGVADYECFQYSSTRQWYFETRIAVTDVSE
Ga0138387_1024439	Ga0138387_10244391	F031929	ADAFYGDDNYWAARVSYGISQFGINSTVGLSVNSNDAQLIDASTNGSALGIPYESSFEYDLANDGAYWLRGAVTPDFAKGAYGIIGYNSDEEVTYGIGYNASDNFKIATELSGDGDTVIRASYSF*
Ga0138387_1024987	Ga0138387_10249871	F062832	LPAAPAGTTGSDNDVGADITVPAQPYPQGDQAGLDDDRANENAPAGDSAPSMQEKPLHKSESPNLVSKSQHTFTTETPRPGAAVEKAGQSQTDFSPILKDARAEGFEGLSNVARNILKGKYYTPTPEEVAGF*
Ga0138387_1027435	Ga0138387_10274351	F009522	MAKAMRAARKAMKGMRRRAMKKSVIAKGKRARLSVFNGNFAKTYTGLKKTDLIKSKTGKIVSRKSSVAGKKAYARIKGWTVAVTKARKALGVKGFVAVKRGTPLYKKAKEFYGK*
Ga0138387_1028046	Ga0138387_10280461	F021393	EDNSNEQVEATEVAKSDDAVQRVETEKSFQETVKSGFDTLTDVVQSIAESQKATQEVLGGLDNRLKALETPSDLPLTPKGTAAGDDVGAKVTVPKDPYPQGVQAGLDDDRSGEDKPASDKGGLKMQKKSEDDTELIEKAEHTFSTETPRPSAALENVDKSIKDTSLILKDARAEGFEGLSNVARNILNGKYYVPSDDEVRGF*
Ga0138387_1028268	Ga0138387_10282681	F076161	SINFSSRCPKTGFRAFAENPVAKSLLLLQFGGKETLPQGASIPNRLTAWTVPQITADPKERNNLLSSPTNPDAPTGEPD*
Ga0138387_1031041	Ga0138387_10310411	F003733	HTATGGIAAHANGGSEDHEAAQGTIGGFAPTAGYEIGFNFPVGDTFFVTVGFADGGGDGAAIARVDDAQGKADVSLHASNPEWWYIAPSMSIFDNSAVYFKIGQASVDLKAIGDVTGSPGDIDGDMWGIGTTTIANNGLFFKTEAGAIQYDQFKITGIGGDAADIVEGNPLVGYGHLSI
Ga0138387_1033829	Ga0138387_10338291	F006551	LRAFLRKIRIAAGKDPNVFLGSHEVYSEIQGLYMPSVRIPNPYGESLVQIDVNGIQSFKGTGVGIHVDSIYGIPFIPSKDAPSDSGDATEIGRLFAFDTSDAEGYGYPRIGIQIAIPTEYYEATRRSPGYPFVNNAFVEKGVFRTMGETVCRHFRSQGKIRDIKL*
Ga0138387_1034707	Ga0138387_10347071	F042932	SYENTVAKSIDTLADVVQSIAQSQQGVEKAVSEIVERVKALETPSDLPLSPKGTQGGDDVGAKVTAPNDPYPVGEQVGLDSDRRNKNPPKKDPSGLRMQEKPVHKAYEEDTEEDEISQPEMVMKSQHEFSTETPRPGSAVETVDKSFTKDFSPILKDARTEGYEGLSKVAQNILSGKYYKPTPEEIGGF*
Ga0138387_1035480	Ga0138387_10354801	F063612	AQRSVAEGSPADNATSVAAKSGLKIPRREMASKEGVDSSVL*
Ga0138387_1039374	Ga0138387_10393742	F062832	TPTDLPAAPAGTTGSDNDVGADITVPAQPYPQGDQAGLDDDRANENAPAGDSAPSMQEKPLHKSELVSKSQHTFTTETPRPNAAIEKSGESQTDFSPILKDARAEGYEGLSSVARNILKGKYYTPTPEEVAGF*
Ga0138387_1041248	Ga0138387_10412482	F062832	TPTDLPAAPAGTTGSDNDVGADITVPAQPYPQGDQAGLDDDRANDNAPAGDSAPSMQEKPLHKSEKLVEKSQHTFTTETPRPGAAVEKAGQGQTDFSPILKDARAEGFEGLSNVARNILKGKYYTPTPEEVAGF*
Ga0138387_1044582	Ga0138387_10445821	F058207	MKHVITLFILSLTLTGCGTVAQVWETGVEVVSTTVDTVVTGASDLVTAIGTDVVETGAFVVDTTAGVVEGVSERIDDETDKLADDEEK*
Ga0138387_1050026	Ga0138387_10500262	F103410	LVVKKCRPKGLQSLIASLPGPSHKSPQTRRSAATCFLAQPIPTHPRASPFDDLISMPAQHVLGRTPEGTSRTVLTDQIGLPKVSRSPQRRTFLHPPEASLEHVSFRLPYHKTAQKLFSNTADHFCQHLRRHARVPDPGPAHRHSDDPKTTFLPTSLAFNRLAQGPRDPRHTTPKGFACRFGCSTAPCYPEVSQRPCLNLANRPKGLLAI*
Ga0138387_1056729	Ga0138387_10567291	F003733	LLVGLGFATPTFAGSSDFSGIFIAGHAELNVVAIDGTHTDNDGEITQGVAGGFAPTAGYELGFNLPLGDTFFVTLGYADGGGDSARIATAHDDDDANGANVTLHASSPHWWYIAPSISIFDNSAVYFKLGQASANLKAIGDVTGGPNNIDGDLWGIGTTSIADNGLFLKTEAGAIQYEQFKITGIGGSSSAVVE
Ga0138387_1057212	Ga0138387_10572121	F036025	TKEIIMNIDKLAPIAAVIVALIAVVVVGGVDRISGAYVLDGNAQWFILALMLIGLVHGLMSPVTEPASIAFIIVAAFMFPSLANTLESIPAIGMYLNQFVDQLAIAIAGYAIAALIIDLKSRITAD*
Ga0138387_1058731	Ga0138387_10587312	F055787	FSTETPRPSAALETVEKSGKDFSPILKDARSNGFDGLSQVARDILNGKYYKPTPEEVGMW
Ga0138387_1059033	Ga0138387_10590331	F105006	MNKFTLLNSNGVARPGFYIEILEFPSGNTPGQAVYVDGRGTDDMINFIYNPETDLLDAWHIRSPDNKFTMTPITVSNRVVGLDVRFTHIPNFVAHFALDLSTEEEEVVYDVLAPPVHLAELTSVNF*
Ga0138387_1059648	Ga0138387_10596481	F003733	MKALRTKVCTYAIALLASIGFATPTLAGSSDFSGIFIAGHAELNVVAIDGSARTGRATTVAGTGGSDNIETTKGTIGGFAPTAGYELGFNLPLGDTFFVTVGYADGGGKSAAIAKVDDQNNTTNVSLHAKNPSWWYVAPAISIFDNSAVYFKLGQAKAQLTAIGDVTGAPGNLKGDMWGIGTTTIANNGLFFKTEAGAVQYDNFSITGIGGNTNRIVEGNPLVGYGH
Ga0138387_1066964	Ga0138387_10669641	F103410	GLSHKSPQTRRSATTCILAQPTPTHPRASPFGALISVPAQHVLGRAPEGTSRTVLTGRIETPKVSRSPQRRIFLHHPEASLKHASFRLLYHKKAQKLFSNTADHFCQHLRRHACVPDPGPAHRHSDDPKITFLAISLAFDRLAQGPHDPGHTTPEGFACRFGCSTAPLLPGGIATTVSQPSQSTRRPLGHLTLCRTIRPEGHIEGPGSRNTIHSKHSKVIR
Ga0138387_1079631	Ga0138387_10796311	F076161	RNRRAEAHRFMESINFSSRCPKTGFQASAEKPVAKSLLLPQFGGHKMPPQGAPIPNRLTAWTVPQITADPKERSNLLSSPTNPDAAMGKPV*
Ga0138387_1080287	Ga0138387_10802871	F009522	MKAMKRVSKFAKGRFAKSVVFRGTKTATTGGLTKANLMKNKNGKIVSKKANANGKKAYARIKGWTVAVQKARKVLGVKGFCAVKKGTPLYKKAKEFYGH*
Ga0138387_1086869	Ga0138387_10868691	F021393	DTENSEQVEETITKSAEAEEVETSQRVSTEKAFHDSVKSSLETLTEVIQSVAETQKGVSDSIDTIDDRLKALETPSDLPLTPRGTAGGDDVGAKVTVPRDPYPQGTQAGLDDDRSGADKPASDKGGLKMQKKSDDTELIEKSEHSFTTETPRPNAAAETVEKSYQKDFSPILKDAREAGFEGLSSVAQNILSGKYYKPSDDEVRGF*
Ga0138387_1088392	Ga0138387_10883921	F092215	NDIALAETFHHSEDISGVRQYAGLIQLAEAHYAPFVDDDYCPLAGPALLVPKVIRLADLALGMEVGQLGIGKATQRCAPSTVGRNCVAAYAQDLSIIILEPLVFLPERGRLRGSTRCEVEYVERKNNYLLALVVGQGNVPIGGGKFEIGGYIANFCRHIPAFIK*
Ga0138387_1089500	Ga0138387_10895002	F076161	LTPRNRRAEAHRFMKSINFLSRCPKTGFRAFAEKPVAKSLLLPQFGGQEMPPQGASIPNRLTAWTVPQIAADPKERSNLLSSPTNPDAPTGKPV*
Ga0138387_1092849	Ga0138387_10928491	F099438	MKKFSIISRSIASFLAVIMFMTPVSSVFAQKAVDNREITVMAERDAKDDAEESGTFLWWCGGFLLTFVIPYVGGLPLALYGYYKGGEPDGVPAARLMDLEKAYGKGNSEAISIYTAAYEKKYTEVARKRHGKAGLIGYGLGLLLAILAFAAIIAILTGASAEDDDFTNDAIDFHLGLMGLEK
Ga0138387_1102035	Ga0138387_11020351	F076161	AHRFMKSINLSSRCPKTGFRAVAEKPVAKSLLLPQFGGQQMPPQGASIPNRLTAWTVLQITADPKERSNLLSSPTNPDTATGKPV*
Ga0138387_1102179	Ga0138387_11021791	F003733	MKALRTKIYTYAIALLASIGFATSTLAGSSDFSGIWIAAHAEMNVVAIDGSSTTPGQGVTVAGTGGSDNTETTQGTIGGFAPTAGYEVGFNLPLGPVFFVTVGFAEGGGDSAAIAKVDDGGAGSKTDVSLHASSPDWYYIAPSISIFDNSAVYVKFGQTTVDLKAIGDVTGAPNNIDGDMWGIGTTSIANNGLFFKTEAGAIQYDQFTITGIGGDANRVVEGNPLVGYGHLSI
Ga0138387_1103379	Ga0138387_11033792	F050311	MKALRTRICTYAIALLASLGFATSTLAGSSDFAGIFIAGHAELNVVAIPGTHTAGGAGSDSSGGTENVETTEGTIGGFAPTAGYEIGFNLPLGDTFFVTVGFADGGGKSAALVKVDDAAGTSDVSLHASNPSW
Ga0138387_1103745	Ga0138387_11037453	F084730	SYLNRITTGIYLYDPSNRLYGYGAPKGALIFFSSFYM*
Ga0138387_1104675	Ga0138387_11046751	F006551	TIDRDSSSTFDCTVESASGTIGTNGVLTDDTLRAFLRKIRIAAGKDPNVFLGSHEVYSEIQGLYMPSVRIPNPYGEALVQVDVNGIQTFRGTGVGIHVDSIYGIPFIPSKDAPSDSGDASEIGRLFAFDTSDAEGYGYPRIGIQIAIPTEYYEATRRSPAYPFVNNAFVEK
Ga0138387_1105872	Ga0138387_11058723	F025846	HGHVTAMVTVLMAQMKPTVLLHHVKTKVYGIVVMASVSQHHMYVMDQLIPVTQAGGLTVPMVQMKA*
Ga0138387_1108667	Ga0138387_11086672	F025846	MQTVQMVVMKLIVLQHHVKTKVYGIVAMANVFQHHMYVMDQVNFVTQAGVLTVLMAQMKA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300011296: Marine microbial communities from the Southern Atlantic ocean - KN S17 250_A metaT (Metagenome Metatranscriptome) (version 2)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences