NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300011237

3300011237: Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 2 - S13.2.20.a - transect 2, age 3 years, surface depth)



Overview

Basic Information
IMG/M Taxon OID3300011237 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121480 | Gp0155452 | Ga0137008
Sample NameArctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 2 - S13.2.20.a - transect 2, age 3 years, surface depth)
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Bristol
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size32695412
Sequencing Scaffolds13
Novel Protein Genes14
Associated Families13

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD00591
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMetagenomes Of Arctic Soils
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → glacial feature → soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationNorway: Midre Lovenbreen, Svalbard
CoordinatesLat. (o)79.112223Long. (o)12.175Alt. (m)N/ADepth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006620Metagenome / Metatranscriptome368Y
F008258Metagenome / Metatranscriptome336Y
F008637Metagenome / Metatranscriptome330Y
F010995Metagenome296Y
F022920Metagenome212Y
F027713Metagenome / Metatranscriptome193Y
F038495Metagenome165Y
F050290Metagenome145Y
F057767Metagenome / Metatranscriptome136Y
F083539Metagenome112Y
F099084Metagenome103Y
F100036Metagenome103Y
F104083Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0137008_100007All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia46981Open in IMG/M
Ga0137008_100023All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales35298Open in IMG/M
Ga0137008_100028All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia32837Open in IMG/M
Ga0137008_100063All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae18377Open in IMG/M
Ga0137008_100105All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia11457Open in IMG/M
Ga0137008_100106All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia11217Open in IMG/M
Ga0137008_101041All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1935Open in IMG/M
Ga0137008_101545All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter1674Open in IMG/M
Ga0137008_104851All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium1014Open in IMG/M
Ga0137008_107313All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium806Open in IMG/M
Ga0137008_110263All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059649Open in IMG/M
Ga0137008_113876All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia530Open in IMG/M
Ga0137008_114185All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium522Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0137008_100007Ga0137008_10000720F057767MNHSAVLAIAAQLDNDQARVADLTHRAQGAVNTLGQNWFGNDSTQFVSSWETHSAQLMGAADVLALMSRQARAQASDQQATSRA*
Ga0137008_100023Ga0137008_1000236F008637VRRVGGFIQLAFATFWLVRGAASAGGGTGRLLTAAVPVIVVAVLVYAVRVTSGKGHRPTSAEARRIERSMTVASVLELVASFALPAIVIASGHSDWVLPSIAITIGPLLLWLDHLVQIPRYRPVGWALTLGPFILVLTMSGAALVTATGLVAGGLLLGTATAGFHDLSRLPLRLPPRLPSRLPTAPPPF*
Ga0137008_100028Ga0137008_10002826F100036MSPVAAMSVPVHPSWTGIIEVLVWGLGGAVRWKGGSVVLQLPDHPHPDRVADLDALRLCLGQIGLPVVFDDSRVISPDASLVEFLDLLVGSGLMEASDHLAA*
Ga0137008_100063Ga0137008_1000637F010995MVLDHGTGYRRRGCVRAIWQGWGVAAGPKHPVLILYEHALLGEGVATYLRNRISVEATVTSAHDPEAVRSALALCPAVIIFESSDPLQQLDLATLAPDAVLIDVSAVITRGSVVAPCSAGLEQILQAVRESSIVA*
Ga0137008_100105Ga0137008_10010510F104083MFVDYEALARRQNALFGGLTPVHERAALVAFVGSGITDANRYEDASAAFDQLLLRAPTYEGALIQVFTHELRDESRGSDFLYLHYAGDPLTVGFLICALTGGGLMAGWKRS*
Ga0137008_100106Ga0137008_1001062F104083MPLFLGFEALAQRRVALFEELTPLHEKTALLIFIGLGITDSSRYEDATAAFNELRRMAPTQKSEVIQVFTRKHREASRCSDFLYLHFAGDPLTFGLLICALTNGGLMAGWQLSSDPTPD*
Ga0137008_101041Ga0137008_1010411F006620MTLSPWTDPDPQPGDFDADLAKLDPRYVERRDGDPDARLIVLVGVEGEDAQRLERIAEARGQTAADVVAELLRDAARALA*
Ga0137008_101041Ga0137008_1010412F022920VAVVRVTISQLVATDVALDKLGARGISAGEVRQLIGNDHVVAGNPRGGGQSDTRRLLLGVTDGGRALTIVVEGTVDPTTWLIVTG*
Ga0137008_101545Ga0137008_1015453F099084VTRCAACDAADLVAHLKVAGDAGPDGLIPTTDRFGTALADIVRCTACGHRQTEPMPADAVLESAYADAASEDYVAEEAGQRETARRALT
Ga0137008_104851Ga0137008_1048513F008258VTQDPIEQALDKLGSLGVPVNDISEKAGAIVGQFGSFDLFEMLDQAMSIDPSQLDVGEMFAELKSKYDDLDPALKVPVAIAAGFVGARVVRWIVR*
Ga0137008_107313Ga0137008_1073131F050290VRPPWESEEAAFAFLLRVLAVCIAIALLAVALKAIF*
Ga0137008_110263Ga0137008_1102632F083539MRRRRPPHEVLAAWVVTGPLGHLYAGLADWAGVLIRYVRARGRLERM*
Ga0137008_113876Ga0137008_1138762F038495VAIDQQRRLKHAAEQAHSAQDRGDLSGANEAWRRYVLIEDALRDPQELLDEGVALSKVAIDLWQQR*
Ga0137008_114185Ga0137008_1141851F027713DRFELSERWCNWKGVDVIFGAARAAVEGGPLDPPLCEVVFDEEFDPLTVYTLEEAHAHLTSNRVRSMDITISHIDEDEARVTLNYSGDRLQLNGYGSDWTRARAAYDAAQAVLAGHFGITTFQLPKLPRDTVGETRKRLVIEELEAALRSAGAHKGHEVEIGEETLEWQ*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.