| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300011227 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0121480 | Gp0156001 | Ga0137475 |
| Sample Name | Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 10 - S13.1.50.a - transect 1, age 50 years, surface depth). |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of Bristol |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 25394805 |
| Sequencing Scaffolds | 14 |
| Novel Protein Genes | 15 |
| Associated Families | 15 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 4 |
| All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 2 |
| All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp. | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium | 1 |
| Not Available | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Metagenomes Of Arctic Soils |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → glacial feature → soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Midre Lovenbreen Svalbard, Norway | |||||||
| Coordinates | Lat. (o) | 78.92777778 | Long. (o) | 12.25416667 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003244 | Metagenome / Metatranscriptome | 498 | Y |
| F003763 | Metagenome / Metatranscriptome | 470 | Y |
| F005040 | Metagenome / Metatranscriptome | 414 | Y |
| F005657 | Metagenome / Metatranscriptome | 394 | Y |
| F006009 | Metagenome / Metatranscriptome | 384 | Y |
| F006205 | Metagenome / Metatranscriptome | 379 | Y |
| F010995 | Metagenome | 296 | Y |
| F012736 | Metagenome / Metatranscriptome | 278 | Y |
| F018331 | Metagenome / Metatranscriptome | 235 | Y |
| F026952 | Metagenome | 196 | Y |
| F056720 | Metagenome | 137 | Y |
| F057767 | Metagenome / Metatranscriptome | 136 | Y |
| F057774 | Metagenome / Metatranscriptome | 136 | Y |
| F067309 | Metagenome | 125 | Y |
| F103850 | Metagenome / Metatranscriptome | 101 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0137475_100112 | All Organisms → cellular organisms → Bacteria | 10853 | Open in IMG/M |
| Ga0137475_100179 | All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis | 7556 | Open in IMG/M |
| Ga0137475_100289 | All Organisms → cellular organisms → Bacteria | 5546 | Open in IMG/M |
| Ga0137475_100567 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 3197 | Open in IMG/M |
| Ga0137475_100615 | All Organisms → cellular organisms → Bacteria | 3003 | Open in IMG/M |
| Ga0137475_101432 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 1662 | Open in IMG/M |
| Ga0137475_101564 | All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium | 1566 | Open in IMG/M |
| Ga0137475_101631 | All Organisms → cellular organisms → Bacteria | 1520 | Open in IMG/M |
| Ga0137475_102093 | All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes | 1297 | Open in IMG/M |
| Ga0137475_103059 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp. | 1009 | Open in IMG/M |
| Ga0137475_103283 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium | 963 | Open in IMG/M |
| Ga0137475_103385 | All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium | 943 | Open in IMG/M |
| Ga0137475_104155 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp. | 825 | Open in IMG/M |
| Ga0137475_108359 | Not Available | 508 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0137475_100112 | Ga0137475_10011211 | F006009 | MIEGEQKVLTRGLAAGTLIGLAIGLITALFIAMKPSSLQR* |
| Ga0137475_100179 | Ga0137475_1001795 | F003763 | MKELRSALTDQLKKPDNPTTELSTLLRKIGREAHDNQIRPEQLIIIFKQLWNSLAESLRPQNVDQYERIRQRLVTLCIQAYYAEQ* |
| Ga0137475_100289 | Ga0137475_1002892 | F018331 | VPENNHVRADCRIHFYNGAMTTRAGLEAEAITRLTEDIEPRAVRAILVQCLAGELAPSTAITQMLDASGAATVRLVIDDVTHRAATISRASDMLVHDRVDELTQVFVETVAAIAEINEAARSRSRPKQADLLRESTDPGAA* |
| Ga0137475_100567 | Ga0137475_1005671 | F012736 | MTGKDTHSRDREPALQISQRLIRTRPSWRAASDGNARAAADACGHLYRDLSRWVGSDGCHALFSRALAQARPNHPALEQIQLHARKDPYIEGVAEAIMAQGDLATADALESMLANLIQLLSRLIGDDMATNLIERSLTAGGSGAP |
| Ga0137475_100615 | Ga0137475_1006154 | F056720 | MGRRMNFAPRMPTIIVALVFVLIGVIGTFGGMLPSLAGMSSQALGAWSFVVAAVVMIAGMIFSGI* |
| Ga0137475_101432 | Ga0137475_1014322 | F006205 | MDDNIKQTLEKLREELANAGKRLADMAEKGQKEWPAAAKRINEEYERLQALLDSAVDKLRKK* |
| Ga0137475_101564 | Ga0137475_1015642 | F057774 | MVSVVMSIRMRKMFAEVRKTFSNAQRAEQDVRERQANWNF* |
| Ga0137475_101631 | Ga0137475_1016312 | F005040 | MAVKVKIEPDKRYFQDRDGTFRAVENLSMTAMTPVYPATIHQMKRSMIFADDRAHAVVALDKNVRVTRNAEMSAVLITYTEPTDATWRALRIHMDAENSTAEIAREAKSQALIERRRKSAEAR* |
| Ga0137475_102093 | Ga0137475_1020932 | F005657 | MADFTKEWIDHLKTQIAGRMTVVADKVDPQTYDELVTDLAWFTFRFAKDPDTKMRKVFR* |
| Ga0137475_102093 | Ga0137475_1020933 | F003244 | VKWKSRRDPDGKIGDERVRTKFAWTPIDADDGYTYWLSPIVVREKLLPKIGRGGFEDEEEAWEVVEAKPIAGESKKKKK* |
| Ga0137475_103059 | Ga0137475_1030591 | F010995 | VASEAQYQVVILYEHALLGEGIAKYLRARAGVESTVVSAFDATAVVSTLALDPAVVIFELNDPLQQMGLAALAPNAVLIDVSTVITRGFGSSHCVAGLEQILQAVGDCSTVARPA* |
| Ga0137475_103283 | Ga0137475_1032831 | F067309 | RVTVPVGASRNCGRREGTPAMSHIIGRPNDDLLDVMLGHDADPEQAFIGGSEQGLLEGDGFDDHPLSDEPSVPEL* |
| Ga0137475_103385 | Ga0137475_1033852 | F026952 | MPDTSFYYYLAYASALGLYGLYALSLYLRRKRLRGK* |
| Ga0137475_104155 | Ga0137475_1041551 | F057767 | MNHPAVLAVAGRLDADQQKVADLLQRTTTAVSTLGQNWFGKDSTQFASDWAAHSKQLHLAADGIAAMAKQARTQASDQQATSTA* |
| Ga0137475_108359 | Ga0137475_1083591 | F103850 | TREQIMASQNAFENAQITVEDIKGKLRTKIETSRKAIQESKKAAVLKNAASALAELDTYGTASTADKYLDEIKQRVAESKAAVEVATGGLDVDRIKTERKARQLQAQSILSEFEVEMGLKKPDAVREAAPFPTESTAQSTPQATPQKTGGA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |