| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300011124 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0121704 | Gp0173504 | Ga0151655 |
| Sample Name | Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, permeate |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Toyama Prefectural University |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 73456061 |
| Sequencing Scaffolds | 8 |
| Novel Protein Genes | 10 |
| Associated Families | 9 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 5 |
| All Organisms → Viruses → Predicted Viral | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Environmental Dna From Seawater And Marine Sediment |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Coastal → Sediment → Marine → Environmental Dna From Seawater And Marine Sediment |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine benthic biome → marine benthic feature → marine sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Japan Sea near Toyama Prefecture, JAPAN | |||||||
| Coordinates | Lat. (o) | 37.035 | Long. (o) | 137.41472 | Alt. (m) | N/A | Depth (m) | 803 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000060 | Metagenome / Metatranscriptome | 2944 | Y |
| F004520 | Metagenome / Metatranscriptome | 434 | Y |
| F023875 | Metagenome | 208 | N |
| F029758 | Metagenome / Metatranscriptome | 187 | Y |
| F049935 | Metagenome / Metatranscriptome | 146 | N |
| F058909 | Metagenome / Metatranscriptome | 134 | Y |
| F069450 | Metagenome | 124 | Y |
| F079928 | Metagenome / Metatranscriptome | 115 | N |
| F097367 | Metagenome | 104 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0151655_1007797 | Not Available | 733 | Open in IMG/M |
| Ga0151655_1008521 | All Organisms → Viruses → Predicted Viral | 1554 | Open in IMG/M |
| Ga0151655_1020376 | Not Available | 739 | Open in IMG/M |
| Ga0151655_1050349 | Not Available | 549 | Open in IMG/M |
| Ga0151655_1053072 | Not Available | 583 | Open in IMG/M |
| Ga0151655_1088993 | Not Available | 532 | Open in IMG/M |
| Ga0151655_1089023 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium | 582 | Open in IMG/M |
| Ga0151655_1099701 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 597 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0151655_1007797 | Ga0151655_10077972 | F058909 | MKLTNTEQNVLLEALDHMEEEIQDLMSERTLRGDMWKERLDACKSIRTKVKES* |
| Ga0151655_1008521 | Ga0151655_10085215 | F079928 | MTKIPTLYDKLKPRVRAKLKENEGKYSSRVRQVIAKLESTYFVQDLTIGELKRIHLFSDTDYVNQTALSIMWGDEIFDDYDGSN* |
| Ga0151655_1020376 | Ga0151655_10203761 | F049935 | MQTDIDFEYWDAQIKHFVSIFQSDDASRADKKEAKTHLTEIQSRLKRDVRDLN |
| Ga0151655_1020376 | Ga0151655_10203763 | F023875 | GITYTHSLFWVIMLFFSLVQFFAYANGLRVQLERRFLKDFNAAVKKSLEEQQPKEYNQLRNN* |
| Ga0151655_1050349 | Ga0151655_10503492 | F029758 | MRKNDRLKAVEHIWYAESDRWIYIERYASGYLGLNCMQGDEYEYFKKNWGKIDRGMSEFYSAMKNDLMKLRAEMSELEFIDKVMWIYLECKMNVERYE* |
| Ga0151655_1053072 | Ga0151655_10530721 | F069450 | MLDLFGAAAILVSVMSNMEQIPGVPSWERVKQLKEAAARYPKSDWSEGSYNEIFRKAADAKRKKYGTTCSYNGY* |
| Ga0151655_1088797 | Ga0151655_10887972 | F000060 | MAQKLNTEFNYRYQVIGDTPWERIKTLKGFLEGRIRALALEEAGKLKHQAKLSKLNYLKNGGEGLEHEILELKADIIEAESHQGTLKEAFELTKDEIKILKKLIKELYDMAEPTRIKGYTDEQMFEENAANEFTVNMGREIQAEMIANGRPSAARIRNAMSNPHTWNALKQIGLIPKKTRILEGNVNPQLKIELKGVEDETV* |
| Ga0151655_1088993 | Ga0151655_10889932 | F004520 | MKLTNEEKDEITMRVVDSLYEKLANELEYELQEHENFPETNDAYMDLFNEMTVKIVKYMRSELFQPMTNEDLK* |
| Ga0151655_1089023 | Ga0151655_10890232 | F097367 | MERKNYYKVRYAGKLIKVIPAHSKWEAIDRIYNDSISEYPWI |
| Ga0151655_1099701 | Ga0151655_10997012 | F058909 | MKLTNTEKNVLLVALDHMEEHIQVLMEDQDSHGDMWHVIDACKTIRTKI* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |