| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300010919 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0111355 | Gp0156075 | Ga0137660 |
| Sample Name | Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS4_55_TP1_12H |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Marine Biological Laboratory |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 1868091 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae | 1 |
| All Organisms → Viruses → Predicted Viral | 2 |
| Not Available | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine hydrothermal vent biome → marine hydrothermal vent → hydrothermal fluid |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Subsurface (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Marker 113, Axial Seamount, Northeast Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 45.922741 | Long. (o) | -129.988104 | Alt. (m) | N/A | Depth (m) | 1522 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F040068 | Metagenome / Metatranscriptome | 162 | N |
| F042865 | Metagenome / Metatranscriptome | 157 | N |
| F055725 | Metagenome / Metatranscriptome | 138 | Y |
| F091607 | Metagenome / Metatranscriptome | 107 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0137660_10247 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae | 2330 | Open in IMG/M |
| Ga0137660_10273 | All Organisms → Viruses → Predicted Viral | 2427 | Open in IMG/M |
| Ga0137660_10492 | All Organisms → Viruses → Predicted Viral | 1188 | Open in IMG/M |
| Ga0137660_11902 | Not Available | 896 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0137660_10247 | Ga0137660_102474 | F040068 | MARSVPKCKRAAYVYDRDFIVVDDISGVLKMRSECAIDGYGFLSSQGDIRNPQEIPPIINEQMAAWPDPRPIGQNIFTPSPDYQYFLFNYFVLSVQSGSTTFDATASVGLNAPIASMAWSVDGVYVVSGLVPVVTMTQGLHDISVLLTDLYGNEQTFTFEYDQPVYLGFDFIDGERFLFIDNEQFDFIG* |
| Ga0137660_10273 | Ga0137660_102733 | F091607 | MSLELQISELTATIKTLNENILLFLGSKEQHSKVECSPVEPVNLGQQVQETFLPEVAKSDEYTREQLQSLCLEATKRNAANRDIIKAIMLSNFEARKTGDLADNQINLCYSMIAQATKDD |
| Ga0137660_10492 | Ga0137660_104922 | F042865 | MSLRVPDYETFLAADDFNKRIWWQFMQSVVNDLPLNGNVAPENTIHANKSCLYVESTGGSAVLWFNPNGNGSATGWIVK* |
| Ga0137660_11902 | Ga0137660_119021 | F055725 | MEFFKGCGIDLKIITELAAEGLSLNSMSKVTGHSKDGIKAALERNNIPYTMGIRERFVTVDGVLMSLGDACNAQGFSRESMYAWRVKRGLNEQDGFDAYIIYQQSKRTIDKPILTFKNATVIYKKERYALNEISDKLKLNRQRFEVFMRQNRYAQNAFERYCYMRGL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |