| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300010871 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0068071 | Gp0125764 | Ga0136263 |
| Sample Name | Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines Pi 3A (Eukaryote Community Metatranscriptome) (version 2) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 497811107 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta | 1 |
| Not Available | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | forest biome → needleleaf forest → forest soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | New Mexico, USA | |||||||
| Coordinates | Lat. (o) | 35.8911 | Long. (o) | -106.2978 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000074 | Metagenome / Metatranscriptome | 2624 | Y |
| F001429 | Metagenome / Metatranscriptome | 696 | Y |
| F015564 | Metagenome / Metatranscriptome | 253 | Y |
| F020480 | Metagenome / Metatranscriptome | 223 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0136263_10216294 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta | 543 | Open in IMG/M |
| Ga0136263_10481869 | Not Available | 690 | Open in IMG/M |
| Ga0136263_11153164 | Not Available | 669 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0136263_10216294 | Ga0136263_102162941 | F015564 | AAKGHSHVSTSSQAVQGHGHGHGSHAQPWEGVNLWRTPYKGDTDTITQVKRSKGTLDQYVENRTRRIQQLQLFALRNKSIPTWIMMPRDKLIFAAQGVIVGYVLYQVVTTVYQHLKSKDRLKLIKLLYKDNVD* |
| Ga0136263_10481869 | Ga0136263_104818691 | F020480 | TSILRSVIVGCLQVFILTLFVVSLFQPWYTEIVDGSATGIASCRWQRDRYWEMDTLECYDCSLCSSGTTWWQTDCEKDHCVHQASVYNATRVCVGISVCLLCIAFITFCGNACFSVPSWVSTAFTGTTLLLSLCIIIAFAVAHPISIRSDREDSGDTTCSNGPCSSFIGDSNFTSLFKLLQGNWRWGASVGYFLYLTGTILLFVTLLVMLSTRYWKRASYPKI* |
| Ga0136263_10659046 | Ga0136263_106590461 | F000074 | RSLLLLAVIFYLCWGHGTIVNPAMRFNPNVNGGWCSWCQGNQVGCSDKVFCDPPTPCYDAPGPLTIAVKYFSSFGNLKDSNGNFWVDQTNGSDVEPVWCPSQTIDYSFYNNADHNGIYQFQLMPGKPGDEKESLFKSFTQWKSINNDPDTTYYKEDGVTPYKAGICANGSAWTPETAHCRDNAFWKSSFQLPSNLTPGNYIFRWIWYGAMTLDLKRVNGPEPSLFVNCKDIIIGTPQQCNKLV* |
| Ga0136263_11153164 | Ga0136263_111531641 | F001429 | RIYSNDSHREFWLDKIVLCSYDLLPKNIRFHLESDSEISFKDVELKDTQTHLVIVLNRLLTELKDVEFYYKKKTFPELEDSGRVTFRVIGNGAKLRLTYNVVQGPEDKTPRINEGRAYFDISDLEIEFDKKSLKHEVLVPMLGQMFKLQIKQQIEDQVEKNLTEWMNKLGDMIADSISQTNRPFVSGFDAARKIFKSSDMGKIYKQRKEKLE* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |