NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300010390

3300010390: Giant kelp blades associated microbial communities from the kelp forest near Monterey Bay Aquarium, California, USA ? sample A



Overview

Basic Information
IMG/M Taxon OID3300010390 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0121514 | Gp0155292 | Ga0136854
Sample NameGiant kelp blades associated microbial communities from the kelp forest near Monterey Bay Aquarium, California, USA ? sample A
Sequencing StatusPermanent Draft
Sequencing CenterLeibniz Institute
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size222905290
Sequencing Scaffolds1
Novel Protein Genes2
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameGiant Kelp Blades Associated Microbial Communities From The Kelp Forest Near Monterey Bay Aquarium, California, Usa
TypeHost-Associated
TaxonomyHost-Associated → Algae → Brown Algae → Unclassified → Unclassified → Marine Brown Algae (Kelp) Associated → Giant Kelp Blades Associated Microbial Communities From The Kelp Forest Near Monterey Bay Aquarium, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Surface (saline)

Location Information
LocationMonterey Bay, California, USA
CoordinatesLat. (o)36.619Long. (o)-121.9Alt. (m)N/ADepth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043080Metagenome / Metatranscriptome157Y
F105228Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0136854_164119All Organisms → cellular organisms → Bacteria1258Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0136854_164119Ga0136854_1641193F043080MTNTNNTNTMTVYTGTFVTQRGEQRTMNFVRISEAPDGVFPMNLRERNLKAGYETVWDIDRQQYRTFNSNTQIGSISSSSRDVSIRLF*
Ga0136854_179263Ga0136854_1792632F105228EIVGAIGSVVVQQALDGDFKSQEFYLRSKGGWSPNSTLNEVEQTEDPDVDESAIDSLMGLLGKNTEQDESNS*

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