Sample 3300010269

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300010269

3300010269: Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 13_49_3.3_201_A3 metaG

Overview

Basic Information
IMG/M Taxon OID	3300010269 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0121361 \| Gp0153736 \| Ga0134102
Sample Name	Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 13_49_3.3_201_A3 metaG
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	254132805
Sequencing Scaffolds	22
Novel Protein Genes	25
Associated Families	22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus odorifer	1
Not Available	13
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Switchgrass Degrading Microbial Communities From High Solid Loading Bioreactors In New Hampshire, Usa
Type	Engineered
Taxonomy	Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Switchgrass Degrading → Switchgrass Degrading Microbial Communities From High Solid Loading Bioreactors In New Hampshire, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	na → na → na

Location Information
Location	USA: Dartmouth College, New Hampshire
Coordinates	Lat. (^o)	43.726	Long. (^o)	-72.1429	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000330	Metagenome / Metatranscriptome	1285	Y
F000412	Metagenome / Metatranscriptome	1169	Y
F001825	Metagenome / Metatranscriptome	629	Y
F001938	Metagenome / Metatranscriptome	614	Y
F002244	Metagenome / Metatranscriptome	578	Y
F003852	Metagenome / Metatranscriptome	465	Y
F004597	Metagenome / Metatranscriptome	431	Y
F005257	Metagenome / Metatranscriptome	406	Y
F007513	Metagenome / Metatranscriptome	349	Y
F009118	Metagenome / Metatranscriptome	322	Y
F010244	Metagenome / Metatranscriptome	306	Y
F020484	Metagenome / Metatranscriptome	223	Y
F020859	Metagenome / Metatranscriptome	221	Y
F022340	Metagenome / Metatranscriptome	214	Y
F038199	Metagenome	166	Y
F063614	Metagenome / Metatranscriptome	129	Y
F075996	Metagenome / Metatranscriptome	118	N
F087072	Metagenome / Metatranscriptome	110	Y
F088752	Metagenome / Metatranscriptome	109	N
F088753	Metagenome / Metatranscriptome	109	N
F091897	Metagenome / Metatranscriptome	107	Y
F095116	Metagenome / Metatranscriptome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0134102_1002126	All Organisms → cellular organisms → Bacteria	14021	Open in IMG/M
Ga0134102_1003577	All Organisms → cellular organisms → Bacteria	8550	Open in IMG/M
Ga0134102_1003978	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	7654	Open in IMG/M
Ga0134102_1011542	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus odorifer	2797	Open in IMG/M
Ga0134102_1012204	Not Available	2656	Open in IMG/M
Ga0134102_1018089	All Organisms → cellular organisms → Bacteria	1893	Open in IMG/M
Ga0134102_1019637	All Organisms → Viruses → Predicted Viral	1764	Open in IMG/M
Ga0134102_1024743	Not Available	1442	Open in IMG/M
Ga0134102_1024843	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1437	Open in IMG/M
Ga0134102_1058222	Not Available	723	Open in IMG/M
Ga0134102_1060417	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	702	Open in IMG/M
Ga0134102_1060694	Not Available	700	Open in IMG/M
Ga0134102_1062176	Not Available	687	Open in IMG/M
Ga0134102_1064351	Not Available	669	Open in IMG/M
Ga0134102_1064430	Not Available	668	Open in IMG/M
Ga0134102_1064723	Not Available	666	Open in IMG/M
Ga0134102_1076151	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae	587	Open in IMG/M
Ga0134102_1079261	Not Available	569	Open in IMG/M
Ga0134102_1080160	Not Available	564	Open in IMG/M
Ga0134102_1081019	Not Available	560	Open in IMG/M
Ga0134102_1083124	Not Available	549	Open in IMG/M
Ga0134102_1089974	Not Available	517	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134102_1002126	Ga0134102_10021267	F088752	MKELQNVYDQITNILKGNNVLMNITPPRPYLIKKDDEERINAEAESLLKEGKVKEYNSKMEEKEACKLYFDEAYKYTK*
Ga0134102_1003577	Ga0134102_10035779	F020859	MKKIIAKEVHPSNVDFRHYFDDDGLKSVGGENCAVYIIPADRGRYSGFNLEEYEEIEEMADSLIETFGEVSPKNEYYPTYKEAMLSHNIDYTSRRCHLLKEWAEHANPYDTRDIAAFLTITTGEEWNVRAFRGYSQGDYCEVVYCKAHYSEEHITEIGKFWLGCGTEFYIDGCRGYYVPDTIRWQEGETLRKYLADCYGCKPDELEIYLYDGEHIVADYRLMD*
Ga0134102_1003737	Ga0134102_10037376	F095116	MSDTMPDWVYETLRNDDLRVYENSNGKVIISQVNERHKEESMTPQAIIAYLKTTKRKPVVMHPRILALGRHVPKRLVIEILQNRVVE*
Ga0134102_1003978	Ga0134102_100397811	F001938	MIEKIYKKERMAICDNCGEGQVCDSWAEVIDFMNEEGWKKRLVDGEWKHFCPECVKVKEP
Ga0134102_1011542	Ga0134102_10115426	F038199	MEYTQAEFLNIIKQYSSTDRKVIKANLKRIMDIYGIKPADIISLGYSPRNVYAWTNKSTKNIPLFEQALNIAVKFNFSITEFIK*
Ga0134102_1012204	Ga0134102_10122041	F087072	MKSRAFTKRVFSLELSEEELSIIAGALYCANNEDIKCFVDKYKYPCSGFNFDEIAECQEKLSEEINKLIENRSTTQRLKPWA*
Ga0134102_1018089	Ga0134102_10180892	F001938	VIGLIEKIYRNKYMAICDNCGTGQECDSWADVMDFMNEEGWKKRLVDGEFKHYCPECQEGLR*
Ga0134102_1019637	Ga0134102_10196371	F063614	MNRRLQKMSYVRLKLTIETLVKTGLEKVNVLGVEESQADLWQIYDMCQELMAFWDSELTEDRIDDLEEIIAELPLLKRA*
Ga0134102_1024743	Ga0134102_10247435	F091897	MMIGSTVSTFVNTQYQCCECGKNLGDKYSRLKGKKQPDVNIINGKQYCNKCADKHWND*
Ga0134102_1024843	Ga0134102_10248432	F010244	MTYKVRFSHSSVSHAKIREKVREGKEVYRHPEGRYIVLEFQGQSGKFREAFWPE*
Ga0134102_1058222	Ga0134102_10582221	F088753	QELEMLKKTNDERLARRLSDWYGFVLSELTSGRVGDFIRSVPADFVSLLFNGKIVEKLINKCTRTLFEMAEDGRIPFETTAYMAESLRTGRKFRLRYAGQLCSKKLGPVLPIILHKETMTDMILREAKLLALSKVAVVVKLYCRIPGEFYPAVCCMSSDCNIAKKVLRNITKDFVKDRMSSFPKVDLKKDFFYLESGYGFGENGIIFINKGRAYYRTKDGTHELPDADLDSREELFMQIS
Ga0134102_1060417	Ga0134102_10604172	F007513	VEARETVVVTVLQRVVALPAVLLVVFSTAMDHETEALEEVLRLHAFLAVVFVSHAVDGTGDTLCLVLLTLL*
Ga0134102_1060694	Ga0134102_10606941	F000412	DSSGAHPCSSIDRAEPRIPSPCSLKAITHAIESKIGSSRSRWNRGTEYYPVGMKTHIEYPDIFFKYNSPYHIEMGTYVLIDLLAGGSVAPAQPTSLRNGIFAQTCSTCLEGPYRKDSSGAHTCRAIDRAEPRIPSPCSLKAITHATGSKIGSSRSCWNRGTEYYPVGMKTHIEYPDIFFENIIVLTSLKWAPMFSSIYYEHLALLHPPNRLASDETKEFLPKHVPH
Ga0134102_1062176	Ga0134102_10621761	F088753	QELEMLKKTNDERLARRLSDWYGFVLSELTSGRVGDFIRSVPADFVALPFNRKRVENLINKCIKTLFEMVKDGKIPFETTAYMAESLRTGRKVRLRHAGQICSKKLGHVLPVVLHKETITEIILREAKFLALSKVAVVVKLYSRIPDKFYPGVCYLSSDCDIAKRALRNITKDFIKDRMSSFPKVNLTKNFFYLESGYGFDESGIIFINKGRVYYRTNDGTHELPDAD
Ga0134102_1064351	Ga0134102_10643511	F005257	MHQNISIMSNEVDHVRSLRKFLTRLRGTNFCTSSARFAPSFIRQPNGPKCTQIVQNAPKHQLRVQWGGLGMFVVKNSDTTSWHELLHFLGPFCTEFRNATKRPKMHPNSTKRTKTSVWGLMGWTWYVHCEKFRCYFVAQTFALVRPVLHRVL*
Ga0134102_1064430	Ga0134102_10644301	F020484	MARTLDVARSEIRRDRLQRWDEMDTTLLFGINFGRIRTRWKGKFVHFAMEQYFSTGSVLENERKIREDEAAMGQRGIEGGDDDEKQRLGP*
Ga0134102_1064723	Ga0134102_10647231	F001825	MHPKLIFTMGQVQQRNGMKPPETRVLDIKYVVRNQTDVLEHLNGVKLPQI*VLDLKECIKIFQVVCLESYYFETFNQMHVDTSFRNMSGA
Ga0134102_1076151	Ga0134102_10761511	F003852	NPESEIMAEIERLELEVRDTRRRLENAKNDADRKVLNKQIDELKAQIEFLRKQLP*
Ga0134102_1079261	Ga0134102_10792611	F075996	FWSYIPTDRISPKGLLYPVSQVMKEGRLFRFVMLVGEPEEEVSLAGKDFFWQDTDRMYRPKYCAVDITADFKGRICTFTGLYARRDGLYVNGKRAGSFEDMRDIFVHYGLGEVWNLITGDIRPSCCVYKYGRLFVPETEVCLGLLSEKVQFPKGYDMKDLGRVERLLEDAGVFKIPEEISLAEVEEKLS
Ga0134102_1080160	Ga0134102_10801601	F022340	MHADTSFRNGSGASTKLRETFKNMSFGPKVVDWAY
Ga0134102_1080160	Ga0134102_10801602	F004597	MHPILIFTMGQVRQRNGMKPPKTRVLDIKYVVRNQTDALEHRNGVQNTQNVTF*
Ga0134102_1081019	Ga0134102_10810191	F002244	TLQNAPKHEFRVQWGGSAGFDAKKSDANSWHKLLH*
Ga0134102_1083124	Ga0134102_10831241	F009118	IANFHSGSGAATKWQETIQNMSFRPKVVDWACLLQKNRKRF*
Ga0134102_1083124	Ga0134102_10831242	F009118	MHPDANFRSGLGAATKWRETIQNLSFRLKEVEWACLLQKNKKRI*
Ga0134102_1089974	Ga0134102_10899741	F000330	VRSLQKVLKRLRGTNFCTSLDRFAPSFVRQPNGPECTKIVRNAPKRKFRVQWGGSGAFVAKNSDATSWHELV

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