NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300010266

3300010266: Orangutan individual fecal microbial communities from fecal samples from Wisconsin, USA - O1111 metagenome



Overview

Basic Information
IMG/M Taxon OID3300010266 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0120398 | Gp0147150 | Ga0129314
Sample NameOrangutan individual fecal microbial communities from fecal samples from Wisconsin, USA - O1111 metagenome
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size232877675
Sequencing Scaffolds16
Novel Protein Genes16
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales8
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D53
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAnimal Gut Microbial Communities From Fecal Samples From Wisconsin, Usa
TypeHost-Associated
TaxonomyHost-Associated → Mammals → Digestive System → Large Intestine → Fecal → Orangutan Individual Fecal → Animal Gut Microbial Communities From Fecal Samples From Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: Wisconsin
CoordinatesLat. (o)43.78Long. (o)-88.79Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029444Metagenome188Y
F029589Metagenome / Metatranscriptome188Y
F032286Metagenome / Metatranscriptome180Y
F036964Metagenome / Metatranscriptome169Y
F039198Metagenome164Y
F056682Metagenome137Y
F068855Metagenome124N
F074899Metagenome / Metatranscriptome119N
F076190Metagenome118Y
F088920Metagenome109Y
F099269Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0129314_1001437All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales16513Open in IMG/M
Ga0129314_1001852All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales13224Open in IMG/M
Ga0129314_1002417All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales10404Open in IMG/M
Ga0129314_1004248All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales6149Open in IMG/M
Ga0129314_1004788All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D55516Open in IMG/M
Ga0129314_1006517All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D54244Open in IMG/M
Ga0129314_1008448All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D53432Open in IMG/M
Ga0129314_1009819All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes3031Open in IMG/M
Ga0129314_1015488All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2074Open in IMG/M
Ga0129314_1018118All Organisms → cellular organisms → Bacteria1819Open in IMG/M
Ga0129314_1026881All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1317Open in IMG/M
Ga0129314_1040140All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales951Open in IMG/M
Ga0129314_1042156All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella914Open in IMG/M
Ga0129314_1059812All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales694Open in IMG/M
Ga0129314_1087177All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium518Open in IMG/M
Ga0129314_1088370All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes512Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0129314_1001437Ga0129314_10014375F036964MNVLKILFPALMVVGALGSLIVNIVGKGNHATSLQWLGACLLYTALMLRNRG*
Ga0129314_1001852Ga0129314_10018525F088920VSAKPHYYPAFGIGVILHLILHFSQKAAIFAPKRAFLLLFVPTLFFFGLSVFFPQTSPKISGQTSLH*
Ga0129314_1002417Ga0129314_10024173F068855VPTVEAQGPQVRKSLALQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAVW*
Ga0129314_1004248Ga0129314_10042484F029589MKEYEIVAKIYNACAGSGRPQTFFEEAALENPDDYVRSKHGKEFARFTKETLPTGQLLYRFDNGSVAYSYEFTEL*
Ga0129314_1004788Ga0129314_10047884F056682MKTQPRAGKVANPPIGQSEMYSASFGTFPSKNRITFPIQEPEKIYENQEVL*
Ga0129314_1006517Ga0129314_10065179F056682MKMQSRAGKVANQSIRQGEIYSASFGAFPSKNCSTFPIQELRKNRENQEVL*
Ga0129314_1008448Ga0129314_10084483F056682MKMQSRAGKMANQSISQGEIYPASFGAFLSKNRSTFPIQELRKNREDQEVL*
Ga0129314_1009819Ga0129314_10098192F032286MVKWVCQIVTPVRHRALVFNTRLFAGNAADDTLVTGGTFRFCRLMCLCVKRRNVKPDSKHRSLPDSALFHADNRTERKTISPFSLALIFTFDFAALSERRSCPEDRSRRFVLLGALDAALRRRAYPVRTVMQFSRFRCDCKTILAKNIALSRISKRS*
Ga0129314_1015488Ga0129314_10154881F056682PHKQNTMKMQSRAGKVANQSIRQGEIYSASFGAFPLKNRSTFPIQELRKNRENQEVL*
Ga0129314_1018118Ga0129314_10181184F076190GSITISVKNVFTAASRVSGRVWSLVRITVPNDLKSVRIRGRKTQNNSLYPYFQREPL*
Ga0129314_1026881Ga0129314_10268812F076190VRTAGGSITISVKNVFTAASRVSGRVWSLVRITVPNDLKFVKIRVEKPQNNSLYPYFQREPL*
Ga0129314_1040140Ga0129314_10401402F074899MARGLDPHADPNAEMRRWKQWNKQAATSSFLDEKTPKSIVQQGPEDSTAVGKDEVGSSNLPISSKDP*
Ga0129314_1042156Ga0129314_10421561F099269KEASAAMRRPPFCARCTFECASGELLLLDDLGDRASGASVLASATGDAGVLVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCASV*
Ga0129314_1059812Ga0129314_10598122F029444MEVSEQLTGFELEDLVSRTVSNLQRPFREDFSLEKSGIIAEKESQIFGRRFVGPDGLRKRRPF*
Ga0129314_1087177Ga0129314_10871771F039198MQITSREFESRKYVQIYLTEDELEEIKTKDIIDKLKKDKSSTAIFVTGNENYPEILEKMITKQVEQNKLKS*
Ga0129314_1088370Ga0129314_10883702F056682VKMKSRAGKAANQPITQGEMYSASFGAFLSKNCIAFPIQELGKIYENQEVL*
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