Sample 3300010253

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300010253

3300010253: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_0600 MetaT (Metagenome Metatranscriptome) (version 2)

Overview

Basic Information
IMG/M Taxon OID	3300010253 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046783 \| Gp0111633 \| Ga0124942
Sample Name	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_0600 MetaT (Metagenome Metatranscriptome) (version 2)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	115212314
Sequencing Scaffolds	16
Novel Protein Genes	17
Associated Families	13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	14
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum picis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → microbial mat material
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Wyoming: Yellowstone National Park
Coordinates	Lat. (^o)	44.963	Long. (^o)	-110.715	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004307	Metagenome / Metatranscriptome	444	Y
F005302	Metagenome / Metatranscriptome	405	Y
F012577	Metagenome / Metatranscriptome	279	Y
F025895	Metagenome / Metatranscriptome	199	Y
F035322	Metagenome / Metatranscriptome	172	Y
F035541	Metagenome / Metatranscriptome	172	Y
F041277	Metagenome / Metatranscriptome	160	Y
F050404	Metagenome / Metatranscriptome	145	Y
F056643	Metagenome / Metatranscriptome	137	N
F057401	Metagenome / Metatranscriptome	136	Y
F073601	Metagenome / Metatranscriptome	120	Y
F101227	Metagenome / Metatranscriptome	102	N
F104560	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0124942_1010583	Not Available	976	Open in IMG/M
Ga0124942_1031779	Not Available	603	Open in IMG/M
Ga0124942_1042277	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum picis	2259	Open in IMG/M
Ga0124942_1057777	Not Available	623	Open in IMG/M
Ga0124942_1076561	Not Available	514	Open in IMG/M
Ga0124942_1083132	Not Available	5598	Open in IMG/M
Ga0124942_1096427	Not Available	503	Open in IMG/M
Ga0124942_1097143	Not Available	682	Open in IMG/M
Ga0124942_1097726	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium	2373	Open in IMG/M
Ga0124942_1103700	Not Available	3439	Open in IMG/M
Ga0124942_1127273	Not Available	736	Open in IMG/M
Ga0124942_1151704	Not Available	823	Open in IMG/M
Ga0124942_1151812	Not Available	809	Open in IMG/M
Ga0124942_1155332	Not Available	525	Open in IMG/M
Ga0124942_1160710	Not Available	563	Open in IMG/M
Ga0124942_1167689	Not Available	884	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0124942_1010583	Ga0124942_10105831	F035322	ETTRVVDISKAPNRVFGQYRGYWTDHLTATTTILPLESRRSTLAWRVASVGEYGSKAIAETRRDEAAVAFDRQIAPITVELDNTRYELMTRDGITVPNWSADVSDYVIVPGYYRNAKITSRTISRERTTYAVSFNPDDFVNALR*
Ga0124942_1025214	Ga0124942_10252141	F104560	RWLDLGGDALHVGLYGTSGCGKDHLLRLWFAALLREPAVKWAILDGKGDWLTPNLARLPQMLFPPAGGYGDDGQRRILDAIGKVNEEAKRRFGLLLSAGVRSVDEYNQTAPDPLPLLVVLATDIIDVVDETERLLVALVSKARALGIRVIVSMQTPTGKRLEWRMNLSTLISGALVDGSQDAPALGVRDLKALRFRPSQLPPPPGERGLFVVRHNNEQFLVRTPALTADFDALVDARVNDALLEALLVSDVTTPRINKRDASAVTAKPVPQRSDAPGRNEARDSASESAGTGVVPSPSPTVPVPDRPGTGESARFGGFSEDGNGDGDEITPSQGVLMPQNASIPVP
Ga0124942_1031779	Ga0124942_10317791	F005302	ATVKIDDVELSRPSGEAYVGGSSDYATVTIGKREPVEVTLTFLYDETTNSATNTIYDQFESPTPMLAVRWSPTGVKPNARAYATSNDGTTTGLGVITNVTLSALDPSEAEPYVAMVTVRAPTLRQYVLGAAPVDLSG*
Ga0124942_1042277	Ga0124942_10422775	F073601	LVGAGCPLLGMSLALGRAMLQAKATCLVMVLPAVVREGQRVFWLLHFAWRCAIEIMECGNIIRTLPVEKRALAGMGVLLQQE*
Ga0124942_1057777	Ga0124942_10577771	F057401	VDIGGNLQVRALVKPGETTVRYDHGYDGSVLRFAQASVAAGWNLAPSLKAFAELLPGYSVARGWVVEGPAGYGVLGPEYDYPETLVVDIGGNLQVRALVKPGETTVRYDHGYDGSVLRFAQASVAGGLVVGAEGYKPAPRYWARVARLLIVAEEPTDSQAEAIRAALRAMVGDDPGGLEEFDRYFAMTGAEILAGPEVFQPTVP*
Ga0124942_1076561	Ga0124942_10765611	F073601	MLQAKATCLVMVLPAKRREGQRMFGLLRFAWRCGIKIMACGRIIRPLPVEQKALAGMGVLLQQG*
Ga0124942_1083132	Ga0124942_10831323	F012577	MLVAITRPHQHFPVPLTAADYEFTTSDDGDERGRVTLPPALARSSVMTQIGDELAVYCTQLSKTIWRGQIERIEETTDGSITWHALGFGALQRDARISVVQNMSDMSRWRPVGSGFIPLSAGYDSRPDLWEYEIVSVGGLAQMRIRTKKAFTITTYDLLFLAYLYDQPERYFRIRAYENIRVTSIAYTNLAVGVLIAPITAVPQPDAYTFTLGTFTLQPAPGTVIETNCYGWIVGVLAPGNETTAGDTSVTFHVTVNNTGAYSGHAIDEGLLTSALTGRGGCCDIKLPTGTNVSIAKPDANLREIVEQSTDEYAQVRYRRKRFIRDRTLPTIDFRADSPLVWRFPETTRVVDISKAPNRVFGQYRGYWTDHLTATTTILPLESRRQSLAWRVASVGEYGSKAIAEARRDEAAAAFDRQIAPITIELDNARYELMTREGITVPNWAADVSDYAIVSGYFRNAKITSRTISRERTTYTVSFNPDDFVNALR*
Ga0124942_1096427	Ga0124942_10964271	F004307	FKELITHNSGRERPALNGAYIGRFLGVSERERPTFETRNDPQPEYEQVFVFEFEIEDPELDAPVRVSKWVRKPARLSHPGKGGKVTNLYKVLAALYGVAQMTDEQLAGAEDFVQNVAVGREYQLTLETKPSGWIEIVHIAPTRRLRQRKEATIDEVPF*
Ga0124942_1097143	Ga0124942_10971431	F050404	MNVNVSNLISNLLSLIVTILIILVLFIGSDVTAQTTPDPTTQEIENFFDPTYRKIAECVRKKYTQNNGNKTTIAGFPTSFFSYDTNAIKTRIQECSGLNIIDSDLVTVVSCLDGIELIPGVGWNQVRPDRLRQCMLATKDTLGIHRQAFVDCVIRNRFNSQTKYLDKDISSGVEKLCVNEQKQAFVFPKNTDYYNGLIYCLDHDKSKPEFLKE
Ga0124942_1097726	Ga0124942_10977264	F056643	LLVRDVGMGRGVADTASALVNYIEDYVARLRSAWLARGDVQLLNVSGIVDVVKYGERAYEGATVTTRFAHLVRAPSA*
Ga0124942_1103700	Ga0124942_11037002	F025895	MSDLIAWIIAAGVIFALVNSNAADGILSALDLSDNLKRAVDWARGVRGVPAGVSAACFFILAYVFGALAYRYDLVPTWRFIQPVANDVLATGAEWLTLFALFLTLLPTLIELASVGLVQRDIRALQYMVYFFVFFDLVTDHAEAVALVNVWRSGGLFTPLPDALENAATVLAQIGWTFAASFAFEFLAILFAVTGLLLAANVRAAGGGAR*
Ga0124942_1127273	Ga0124942_11272731	F073601	MLRAKATCLVMALPAKRPEGQRMFGLLRFAWRCAIKIMACGSIIRTLPVEKKALAGTGVLLQQG*
Ga0124942_1151704	Ga0124942_11517041	F101227	NMTPKSVSAYYVAILFTTVLFQLDGLRWLVISIQQWLISGLQSVTTLPITATIYWIVLFLVTAIITSLFKFFIIDPLELHANDDQTRDWWVWLFALLVFGLFIYTLNLNFNQSMPLELPKFLVKIFQGSRNTPGAEINSLAESNFYSIFPWLWQVGPVIFMYYYASQEKSKKASSS*
Ga0124942_1151812	Ga0124942_11518121	F041277	MRPATPLAVENSVGKLAAHEAPNASLGKRAWRTPTP
Ga0124942_1155332	Ga0124942_11553321	F005302	MAHFNVIQGLYAGDFAVEISANGTIWTAVSDATVKIDDVELSRPSGEAYVGGSSDYATVTVGKREPVEITLTFLYNETTNSASNTIYDYFESPTPVLAVRWSPTGVKPNARAYATSNDGTTTGPGVITNVTLSALDP
Ga0124942_1160710	Ga0124942_11607101	F004307	MFKELITHNNWRSRPALNGAYIGRFLGVSERERPTFETRLSPEPEMEDVFVFEFEVEDPELDAPVRVSKWVRKPTRLSHPGKGGKVTNLYKVLSALYGVPQMTDEQLNNAEEFVQNVAVGREYQLTLETRPSGWVEIVHISPVRRARQLREKPVDEVPF*
Ga0124942_1167689	Ga0124942_11676891	F035541	VKRLALIISLTVVAGLLAIPSAYAYTRHPGNIPTTSLNNIPITDTLKEGTMEWDLTARYNQDVFNRGRRVSTRLFLALFDNFEIGMSWDISRPAGPVGFGLKYKVLDEYEGFPVSFAVGASSITGNWQRTQRDPTYYAVLGVHDVRLGGWWDWYVGVANNPLGFNNEDNSIFGGFKLWFSDDFQFLADYFGYNDNEENIISAGVNYDWVNHIGFHGWVERNSETEDNLFVLQLAVRGDMRDLTAEVSDPE*

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