Sample 3300010249

Basic Information
IMG/M Taxon OID	3300010249 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046783 \| Gp0111634 \| Ga0124943
Sample Name	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_0700 MetaT (Metagenome Metatranscriptome) (version 2)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_0700 MetaT (Metagenome Metatranscriptome) (version 2)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	91590924
Sequencing Scaffolds	19
Novel Protein Genes	22
Associated Families	15

Dataset Contents

Total Genome Size

91590924

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	15
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Pelolinea → unclassified Pelolinea → Pelolinea sp.	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Pelolinea → unclassified Pelolinea → Pelolinea sp.

Ecosystem Assignment (GOLD)
Name	Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Ecosystem Assignment (GOLD)

Name

Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → microbial mat material
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

aquatic biome → hot spring → microbial mat material

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Wyoming: Yellowstone National Park
Coordinates	Lat. (^o)	44.963	Long. (^o)	-110.715	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Wyoming: Yellowstone National Park

Coordinates

Lat. (^o)

44.963

Long. (^o)

-110.715

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004307	Metagenome / Metatranscriptome	444	Y
F004791	Metagenome / Metatranscriptome	423	Y
F005302	Metagenome / Metatranscriptome	405	Y
F015737	Metagenome / Metatranscriptome	252	N
F016404	Metagenome / Metatranscriptome	247	N
F030445	Metagenome / Metatranscriptome	185	N
F035322	Metagenome / Metatranscriptome	172	Y
F056643	Metagenome / Metatranscriptome	137	N
F065815	Metagenome / Metatranscriptome	127	N
F073601	Metagenome / Metatranscriptome	120	Y
F081941	Metagenome / Metatranscriptome	114	N
F082732	Metagenome / Metatranscriptome	113	N
F097413	Metagenome / Metatranscriptome	104	N
F098323	Metagenome / Metatranscriptome	104	Y
F099362	Metagenome / Metatranscriptome	103	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0124943_1000710	Not Available	562	Open in IMG/M
Ga0124943_1022070	Not Available	897	Open in IMG/M
Ga0124943_1022436	Not Available	1156	Open in IMG/M
Ga0124943_1023397	Not Available	3275	Open in IMG/M
Ga0124943_1023533	Not Available	928	Open in IMG/M
Ga0124943_1028554	Not Available	849	Open in IMG/M
Ga0124943_1029242	Not Available	839	Open in IMG/M
Ga0124943_1054958	All Organisms → cellular organisms → Bacteria	1035	Open in IMG/M
Ga0124943_1063662	Not Available	790	Open in IMG/M
Ga0124943_1067868	Not Available	694	Open in IMG/M
Ga0124943_1074943	Not Available	774	Open in IMG/M
Ga0124943_1077250	All Organisms → cellular organisms → Bacteria	1378	Open in IMG/M
Ga0124943_1077273	Not Available	533	Open in IMG/M
Ga0124943_1096716	All Organisms → cellular organisms → Bacteria	3619	Open in IMG/M
Ga0124943_1109472	Not Available	653	Open in IMG/M
Ga0124943_1127491	Not Available	644	Open in IMG/M
Ga0124943_1134132	Not Available	1013	Open in IMG/M
Ga0124943_1148637	Not Available	1160	Open in IMG/M
Ga0124943_1149470	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Pelolinea → unclassified Pelolinea → Pelolinea sp.	1955	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0124943_1000451	Ga0124943_10004511	F098323	MLKNKSWILLVIFALFGFITTSIPVWTQENTTTQFDNTILAKNQQPVVPIGKADTSVVPACQNLINEIVKCPSGNGTCVAEKLRKDNKLTENTKRCLGLNSNNLNENQKLDLINKVCLVLPAISSSDRIFFCQACIGRGVKKPSNWTDQDIVDKCNSTIPANNSSKKLVNRKIDQNG
Ga0124943_1000710	Ga0124943_10007101	F004307	MFKELITHNSGRERPALNGAYIGRFMGVSERERPTFETRNDPQPEYERVFVFEFEVEDPELDAPVRVSKWVRKPARLSHPGKGGKVTNLYKVLAALYGVAQMTDEQLAGAEDFVQNVAVGREYQLTLETKPSGWIEIVHIAPARRLRQRKEATIDEVPF*
Ga0124943_1022070	Ga0124943_10220701	F099362	MPVSNPTWSWDRAATYGLPKLIAQMRDQIAGPPTYEAFKKLGAVVPDKGGSTILFPLRHTAINVQVVGANPLSITPPASVTDILSAASYDWAELYAQIAVDNRDINKVSDNPERAATMMRRYAESAVRDFYKAINTALHGSGTGTESSYGGFGYYLDGASTGTLGGIGKSNTWWRAKQKSSVGAMSVDKLDAWITELAADYESPHLFVSTPAIISKVRSLLQAGERVVNSGGDDQEFGALAIAYAGVLLVADASCPAGTGYLINSNSIKVYVDSNE
Ga0124943_1022436	Ga0124943_10224363	F056643	DDLLLVRDVGMGRGVADTATALVEYIEDYVAKLRFAWLQRGDVQLINVSGVVDVVKYGERAYEGVTMTTRFAHLVRSPSV*
Ga0124943_1023397	Ga0124943_10233974	F065815	PQANQPTEETSVTDAKKNNTSTPEVEQQSKSGFYQDLNSVLLVTILSLLIYTIVGSGLSWIVSWGLAQANLYPWVFNQSPILLWAIFGLVSMLIIGVTMVQVESLVETRILPKLQKFSQPTLLLVNFLVLMGLILGMYWLVSNFVNYLNITFWLK*
Ga0124943_1023533	Ga0124943_10235333	F056643	DDLLLVRDVGMGRGVADTATALVEYIEDYVAKLRFAWLQRGDVQLINVSGVVDVIKYGERAYEGVTMTTRFAHLVRSPSV*
Ga0124943_1028554	Ga0124943_10285542	F081941	LGILSLSLFIISGFHFILIQLSNLPYSDYKLEITTAIFFVLDFLLVIPTTFTTTQFELSPSLKLILDTIYMMTGSIYLVLAAGVFYMDLEDNKILAKRYTRWSVLVFLFFFFIIAMETVRRSMELNILLTFTGINLLLILVIMFADLKSLLNPYPNYQGKTNSIEIISFLLLSATILIGKTLHLVFVSSIFG*
Ga0124943_1029242	Ga0124943_10292421	F081941	LGILSLSLFIISGFHFILIQLSNLPYSDYKLEITTAIFFVLNFLLSIPTGFTATQFELSPSLKLLLDTIYMMTGSIYLVLAAGVFYMDLEDNKILAKRYTRWSVIVFSIFFYLISLETERYSMEPNILLTFTGINSLLILVIMFSDLKDLLNSRLNHQNKVSPTEIISFLLLSTTILIGKTLHLVLMLNIFG*
Ga0124943_1054958	Ga0124943_10549581	F082732	MTEIVMNQTELAAEIAARLRDEVAAAVKAQRVGVATELDEEGADVGASFGDFLKSVAYNDTRRLRAIYKSSKALDETTGAGGGFLVPTQFEQRIRAVGAPMLFDQLVAANRGPLTLRTNAAELALPVLEQDQTPDVESSALVGGVR
Ga0124943_1063662	Ga0124943_10636622	F073601	MLQAKATCLVMVLPAKRREGQRMFGLLHFAWRCAIKIMECGNIIRTLPVEKKALAGMGVLLQQG*
Ga0124943_1067868	Ga0124943_10678681	F004791	TEPATIYDVDAIRVDRGVLTIRGAAKLLNRELTAPVIARLVRNAIGDQADRFPIGALKVVYESVLPKIFEPDSAIRSRVEALMPNIATITLGEYHQFLEASERGIAFPEVAQTLLTKAYGDGILEEPYAAAALLLKKIFDLVGEEGKG*
Ga0124943_1074943	Ga0124943_10749432	F035322	SLAWRVASVGEYGSKAIAETRRDEAAVAFDRQIAPITVELDNARYELMTRDGITVPNWAADVSDYAIVPGYFRNAKITSRTISRERTTYTVSFNPDDFVNALR*
Ga0124943_1076767	Ga0124943_10767671	F015737	SATIPTEKTKLNPKTAFQQTLLNWQEKQFTTELIPEILKEGELTTDLEDFALFYGIKVLAILNQDILNTQLGSTEWQLPETTTTPGSLSTKPNILVLTSEIYAPLFINLNCDYLPISEDLPELLKAVTQIITNNPEIKLILINSDNERIETYLHKHLTSNVLITTIEFTKFAQNAFFDSLVRKTLGVRLT*
Ga0124943_1077250	Ga0124943_10772504	F073601	VGAGCPLLGVSLALGRAMLQAKATCLVMALPAKRREGQRMFGRLHFAWRCAIKIMACGSIIRTLPVEKKALAGMGVLLQQG*
Ga0124943_1077273	Ga0124943_10772731	F016404	VETDALTEENRNAVLWALLHLALDPDAPAGARVAAARLFLAQFGETNAERDVLVVVDDAA
Ga0124943_1096716	Ga0124943_10967165	F097413	SRHGSHLTGYFPIFDVENIKIEFGEIPRGRNRIDYAGPRVAAGENGVGIISVDSFTRNEWSIHTRFWDGESETYKDREYQIFTDDYFLSVARVAYYKGNWIAIAPIEREYKVANLGPDLKKRGNINQIEWKTFESDEVTYAGHAELITNRDFTELYAIFGARGDNSQIITIMKYKEDTNNEATGTFEKIAEINTSDTNGGVCYRPSGALDSQGNLHFTCDDTGGSLYYYTNAEGSWKKQLLTNNGLNGVLRIDEKDGIHVGFITFRPRSPAYMYSSDGNTWTRPIVANEIVNPKYGFTANMVGGVAIHGQNPYLLVAFEDWTNGGPRVGLIMFGAET*
Ga0124943_1109472	Ga0124943_11094721	F004307	MFKELITHNSGRERPALNGAYIGRFLGVSERERPTFETRNDPQPEYEQVFVFEFEIEDPELDAPVRVSKWVRKPARLSHPGKGGKVTNLYKVLSALYGVPQMTDEQLANAEDFVQNVAVGREYQLTLETKPSGWIEIVHIAPTRRLRQRKEATIDEVPF*
Ga0124943_1127491	Ga0124943_11274911	F073601	MLQAKATCLVMVLPAKRREGQRMFGLLHIAWRCAIEIMECGNIIRTLPVEKKALVGMGVLLQQE*
Ga0124943_1134132	Ga0124943_11341321	F005302	TTWTAVSDATVKIDDVEMTRPSGEAYVGGSSDYATITIGKREPVEITLTFLYSEATGAAATAIYDQFESATPRLGVRWSPTGLVASARAYATSNDGNATGLGVITGVTLSALDPSEAEPYVMMVTVRTPTLRQYAIAATNPTNLA*
Ga0124943_1134132	Ga0124943_11341322	F004791	MSEPAKIYDVEAIRVDRTALTIREAATLLNRELTPEVIARLVRKAIGNQADQFPIRALKAVYERALPKIFEPDEAIRSKVAGLTPNVATITLGEYHQFLEASERKIAFPDVAATLLVKAYGDDILNEPYAAAAPLLKRIFDAVGDEGKE*
Ga0124943_1148637	Ga0124943_11486372	F030445	MLIAITKPHQQFPIPLTSAEYELTTSEDGDERGRITLPPALARSAVMTQIGDELIVYCTQLSKTIWRGQIERIEEARDGNITWYALGFGALQREARISVVQQMSDMTR
Ga0124943_1149470	Ga0124943_11494704	F073601	GVSLALGRAMLQAKATCLVMALPAKRREGQRMFWVLHFAWCCAIKIMECGSIIRTLPVEKKAFVGMGVLLQQE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300010249: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_0700 MetaT (Metagenome Metatranscriptome) (version 2)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences